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#ifndef STIM_ENVI_H
#define STIM_ENVI_H
#include "../envi/envi_header.h"
#include "../envi/bsq.h"
#include "../envi/bip.h"
#include "../envi/bil.h"
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#include <iostream>
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//#include "../image/image.h"
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namespace stim{
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/** This class implements reading of ENVI hyperspectral files. These files can be stored in multiple orientations
(including BSQ, BIP, and BIL) in order to optimize streaming speed depending on applications. Basic ENVI
files are stored on disk as a large binary file with a corresponding header. Code for reading and processing
ENVI header files is in the envi_header class.
*/
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class envi{
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void* file; //void pointer to the relevant file reader (bip, bsq, or bil - with appropriate data type)
public:
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envi_header header;
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/// Returns the size of the data type in bytes
unsigned int type_size(){
if(header.data_type == envi_header::float32) return 4;
if(header.data_type == envi_header::float64) return 8;
exit(1);
}
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/// Returns the progress of the current processing operation as a percentage
void reset_progress(){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
((bsq<float>*)file)->reset_thread_data();
else if(header.data_type == envi_header::float64)
((bsq<double>*)file)->reset_thread_data();
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
((bil<float>*)file)->reset_thread_data();
else if(header.data_type == envi_header::float64)
((bil<double>*)file)->reset_thread_data();
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
((bip<float>*)file)->reset_thread_data();
else if(header.data_type == envi_header::float64)
((bip<double>*)file)->reset_thread_data();
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
}
/// Returns the progress of the current processing operation as a percentage
unsigned int progress(){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->get_thread_data();
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->get_thread_data();
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->get_thread_data();
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->get_thread_data();
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->get_thread_data();
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->get_thread_data();
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
}
return 0;
}
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/// Allocate memory for a new ENVI file based on the current interleave format (BIP, BIL, BSQ) and data type.
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bool allocate(){
file = NULL; //set file to a NULL pointer
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if(header.interleave == envi_header::BSQ){
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if(header.data_type ==envi_header::float32)
return(file = new bsq<float>());
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else if(header.data_type == envi_header::float64)
return(file = new bsq<double>());
}
else if(header.interleave == envi_header::BIP){
if(header.data_type ==envi_header::float32)
return(file = new bip<float>());
else if(header.data_type == envi_header::float64)
return(file = new bip<double>());
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32)
return(file = new bil<float>());
else if(header.data_type == envi_header::float64)
return(file = new bil<double>());
}
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exit(1); //if the function hasn't already returned, we don't handle this state
}
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/// Open an existing ENVI file given the filename and a header structure
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/// @param filename is the name of the ENVI binary file
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/// @param header is an ENVI header structure
bool open(std::string filename, stim::envi_header h){
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allocate();
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header = h;
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//load the file
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if(header.interleave == envi_header::BSQ) { //if the infile is bsq file
if(header.data_type == envi_header::float32) {
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return ((bsq<float>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
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}
else if(header.data_type == envi_header::float64) {
return ((bsq<double>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else
return false;
}
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else if(header.interleave == envi_header::BIL) { //if the infile is bil file
if(header.data_type == envi_header::float32) {
return ((bil<float>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else if(header.data_type == envi_header::float64) {
return ((bil<double>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else
return false;
}
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else if(header.interleave == envi_header::BIP) { //if the infile is bip file
if(header.data_type == envi_header::float32) {
return ((bip<float>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else if(header.data_type == envi_header::float64) {
return ((bip<double>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else
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return false;
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}
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return true;
}
/// Open an existing ENVI file given the file and header names.
/// @param filename is the name of the ENVI binary file
/// @param headername is the name of the ENVI header file
bool open(std::string filename, std::string headername){
//allocate memory
//allocate();
stim::envi_header h;
h.load(headername);
//load the header
//header.load(headername);
return open(filename, h);
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}
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/// Normalize a hyperspectral ENVI file given a band number and threshold.
/// @param outfile is the name of the normalized file to be output
/// @param band is the band label to be output
/// @param threshold is a threshold value specified such that normalization will only be done to values in the band > threshold (preventing division by small numbers)
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bool normalize(std::string outfile, double band, double threshold = 0.0){
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if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
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if(header.data_type ==envi_header::float32)
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return ((bsq<float>*)file)->normalize(outfile, band, threshold);
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else if(header.data_type == envi_header::float64)
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return ((bsq<double>*)file)->normalize(outfile,band, threshold);
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else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
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else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->normalize(outfile, band);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->normalize(outfile,band);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->normalize(outfile, band);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->normalize(outfile,band);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
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return false;
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}
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/// Performs piecewise linear baseline correction of a hyperspectral file/
/// @param outfile is the file name for the baseline corrected output
/// @param w is a list of band labels to serve as baseline points (zero values)
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bool baseline(std::string outfile, std::vector<double> w){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->baseline(outfile, w);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->baseline(outfile,w);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->baseline(outfile, w);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->baseline(outfile, w);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
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else if(header.interleave == envi_header::BIP){ //if the infile is bip file
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if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->baseline(outfile, w);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->baseline(outfile, w);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
}
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/// Converts ENVI files between interleave types (BSQ, BIL, and BIP)
/// @param outfile is the file name for the converted output
/// @param interleave is the interleave format for the destination file
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bool convert(std::string outfile, stim::envi_header::interleaveType interleave){
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if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32){ //if the data type of infile is float
if(interleave == envi_header::BSQ){
std::cout<<"ERROR: is already BSQ file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL) //if the target file is bil file
return ((bsq<float>*)file)->bil(outfile);
else if(interleave == envi_header::BIP) //if the target file is bip file
return ((bsq<float>*)file)->bip(outfile);
}
else if(header.data_type == envi_header::float64){ //if the data type is float
if(interleave == envi_header::BSQ){
std::cout<<"ERROR: is already BSQ file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL)
return ((bsq<double>*)file)->bil(outfile);
else if(interleave == envi_header::BIP)
return ((bsq<double>*)file)->bip(outfile);
}
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else{
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exit(1);
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}
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32){ //if the data type of infile is float
if(interleave == envi_header::BIL){
std::cout<<"ERROR: is already BIL file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BSQ) //if the target file is bsq file
return ((bil<float>*)file)->bsq(outfile);
else if(interleave == envi_header::BIP) //if the target file is bip file
return ((bil<float>*)file)->bip(outfile);
}
else if(header.data_type == envi_header::float64){ //if the data type is float
if(interleave == envi_header::BIL){
std::cout<<"ERROR: is already BIL file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BSQ)
return ((bil<double>*)file)->bsq(outfile);
else if(interleave == envi_header::BIP)
return ((bil<double>*)file)->bip(outfile);
}
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else{
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exit(1);
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}
}
else if(header.interleave == envi_header::BIP){
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if(header.data_type ==envi_header::float32){ //if the data type of infile is float
if(interleave == envi_header::BIP){
std::cout<<"ERROR: is already BIP file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL) //if the target file is bil file
return ((bip<float>*)file)->bil(outfile);
else if(interleave == envi_header::BSQ) //if the target file is bsq file
return ((bip<float>*)file)->bsq(outfile);
}
else if(header.data_type == envi_header::float64){ //if the data type is float
if(interleave == envi_header::BIP){
std::cout<<"ERROR: is already BIP file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL) //if the target file is bil file
return ((bip<double>*)file)->bil(outfile);
else if(interleave == envi_header::BSQ) //if the target file is bsq file
return ((bip<double>*)file)->bsq(outfile);
}
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else{
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exit(1);
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}
}
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else{
std::cout<<"ERROR: unidentified interleave type"<<std::endl;
exit(1);
}
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return false;
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}
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/// Builds a mask from a band image and threshold value
/// @param mask_band is the label for the band that will be used to build the mask
/// @param threshold is a value selected such that all band values greater than threshold will have a mask value of 'true'
/// @param p is memory of size X*Y that will store the resulting mask
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bool build_mask(double mask_band, double threshold, unsigned char* p = NULL) {
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if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
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return ((bsq<float>*)file)->build_mask(mask_band, threshold, p);
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else if(header.data_type == envi_header::float64)
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return ((bsq<double>*)file)->build_mask(mask_band, threshold, p);
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else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
|
f4c5d71b
David Mayerich
started working w...
|
408
|
return ((bil<float>*)file)->build_mask(mask_band, threshold, p);
|
4a6f666c
heziqi
Added mask method
|
409
|
else if(header.data_type == envi_header::float64)
|
f4c5d71b
David Mayerich
started working w...
|
410
|
return ((bil<double>*)file)->build_mask(mask_band, threshold, p);
|
4a6f666c
heziqi
Added mask method
|
411
412
413
|
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
|
cacc3cdc
heziqi
attempt to fix CImg
|
414
|
|
4a6f666c
heziqi
Added mask method
|
415
416
|
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
|
f4c5d71b
David Mayerich
started working w...
|
417
|
return ((bip<float>*)file)->build_mask(mask_band, threshold, p);
|
4a6f666c
heziqi
Added mask method
|
418
|
else if(header.data_type == envi_header::float64)
|
f4c5d71b
David Mayerich
started working w...
|
419
|
return ((bip<double>*)file)->build_mask(mask_band, threshold, p);
|
4a6f666c
heziqi
Added mask method
|
420
421
422
|
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
|
bba4f4d9
David Mayerich
minor warning fixes
|
423
424
|
return false;
|
740f8cd2
heziqi
added apply_mask
|
425
426
|
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
427
428
429
430
|
/// Applies a mask to the ENVI file.
/// @param outfile is the name of the resulting masked output file
/// @param p is memory of size X*Y containing the mask (0 = false, all other values are true)
|
e843658b
Brad Deutsch
Previous push did...
|
431
|
bool apply_mask(std::string outfile, unsigned char* p)
|
740f8cd2
heziqi
added apply_mask
|
432
433
|
{
|
e843658b
Brad Deutsch
Previous push did...
|
434
435
|
if (header.interleave == envi_header::BSQ){ //if the infile is bsq file
if (header.data_type == envi_header::float32)
|
740f8cd2
heziqi
added apply_mask
|
436
|
return ((bsq<float>*)file)->apply_mask(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
437
|
else if (header.data_type == envi_header::float64)
|
740f8cd2
heziqi
added apply_mask
|
438
439
|
return ((bsq<double>*)file)->apply_mask(outfile, p);
else
|
e843658b
Brad Deutsch
Previous push did...
|
440
|
std::cout << "ERROR: unidentified data type" << std::endl;
|
740f8cd2
heziqi
added apply_mask
|
441
442
|
}
|
e843658b
Brad Deutsch
Previous push did...
|
443
444
|
else if (header.interleave == envi_header::BIL){ //if the infile is bil file
if (header.data_type == envi_header::float32)
|
740f8cd2
heziqi
added apply_mask
|
445
|
return ((bil<float>*)file)->apply_mask(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
446
|
else if (header.data_type == envi_header::float64)
|
740f8cd2
heziqi
added apply_mask
|
447
448
|
return ((bil<double>*)file)->apply_mask(outfile, p);
else
|
e843658b
Brad Deutsch
Previous push did...
|
449
|
std::cout << "ERROR: unidentified data type" << std::endl;
|
740f8cd2
heziqi
added apply_mask
|
450
451
|
}
|
e843658b
Brad Deutsch
Previous push did...
|
452
453
|
else if (header.interleave == envi_header::BIP){ //if the infile is bip file
if (header.data_type == envi_header::float32)
|
740f8cd2
heziqi
added apply_mask
|
454
|
return ((bip<float>*)file)->apply_mask(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
455
|
else if (header.data_type == envi_header::float64)
|
740f8cd2
heziqi
added apply_mask
|
456
457
|
return ((bip<double>*)file)->apply_mask(outfile, p);
else
|
e843658b
Brad Deutsch
Previous push did...
|
458
|
std::cout << "ERROR: unidentified data type" << std::endl;
|
740f8cd2
heziqi
added apply_mask
|
459
|
}
|
4a6f666c
heziqi
Added mask method
|
460
461
|
else{
|
e843658b
Brad Deutsch
Previous push did...
|
462
463
464
465
466
467
|
std::cout << "ERROR: unidentified file type" << std::endl;
exit(1);
}
return false;
}
|
43dec788
David Mayerich
added code for si...
|
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
|
/// sift copies all spectra corresponding to nonzero values of a mask into a pre-allocated matrix
/// @param matrix is the destination for the pixel data
/// @param p is the mask
bool sift(void* matrix, unsigned char* p){
if (header.interleave == envi_header::BSQ){ //if the infile is bsq file
if (header.data_type == envi_header::float32)
return ((bsq<float>*)file)->sift((float*)matrix, p);
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->sift((double*)matrix, p);
else
std::cout << "ERROR: unidentified data type" << std::endl;
}
return false;
}
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
485
|
/// sift-mask saves in an array only those spectra corresponding to nonzero values of the mask.
|
43dec788
David Mayerich
added code for si...
|
486
487
|
/// @param outfile is the name of the sifted output file
/// @param p is the mask
|
2fcab4f0
David Mayerich
added unsifting f...
|
488
|
bool sift(std::string outfile, unsigned char* p)
|
e843658b
Brad Deutsch
Previous push did...
|
489
490
|
{
|
2fcab4f0
David Mayerich
added unsifting f...
|
491
492
493
494
495
496
497
498
499
|
//calculate the number of non-zero values in the mask
unsigned int nnz = 0;
unsigned int npixels = header.lines * header.samples;
for(unsigned int i = 0; i < npixels; i++)
if( p[i] > 0 ) nnz++;
//create a new header
envi_header new_header = header;
|
f7e99517
David Mayerich
added sifting for...
|
500
501
|
//if a BIL file is sifted, it's saved as a BIP
if(header.interleave == envi_header::BIL)
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
502
|
new_header.interleave = envi_header::BIP;
|
f7e99517
David Mayerich
added sifting for...
|
503
|
|
2fcab4f0
David Mayerich
added unsifting f...
|
504
505
506
507
508
509
510
|
//set the number of lines to 1 (this is a matrix with 1 line and N samples)
new_header.lines = 1;
new_header.samples = nnz;
new_header.save(outfile + ".hdr");
std::cout<<"Saved: "<<outfile+".hdr"<<std::endl;
|
e843658b
Brad Deutsch
Previous push did...
|
511
512
|
if (header.interleave == envi_header::BSQ){ //if the infile is bsq file
if (header.data_type == envi_header::float32)
|
2fcab4f0
David Mayerich
added unsifting f...
|
513
|
return ((bsq<float>*)file)->sift(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
514
|
else if (header.data_type == envi_header::float64)
|
2fcab4f0
David Mayerich
added unsifting f...
|
515
|
return ((bsq<double>*)file)->sift(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
516
517
518
519
520
521
|
else
std::cout << "ERROR: unidentified data type" << std::endl;
}
else if (header.interleave == envi_header::BIL){ //if the infile is bil file
if (header.data_type == envi_header::float32)
|
2fcab4f0
David Mayerich
added unsifting f...
|
522
|
return ((bil<float>*)file)->sift(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
523
|
else if (header.data_type == envi_header::float64)
|
2fcab4f0
David Mayerich
added unsifting f...
|
524
|
return ((bil<double>*)file)->sift(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
525
526
527
528
529
530
|
else
std::cout << "ERROR: unidentified data type" << std::endl;
}
else if (header.interleave == envi_header::BIP){ //if the infile is bip file
if (header.data_type == envi_header::float32)
|
2fcab4f0
David Mayerich
added unsifting f...
|
531
|
return ((bip<float>*)file)->sift(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
532
|
else if (header.data_type == envi_header::float64)
|
2fcab4f0
David Mayerich
added unsifting f...
|
533
|
return ((bip<double>*)file)->sift(outfile, p);
|
e843658b
Brad Deutsch
Previous push did...
|
534
535
536
537
538
539
|
else
std::cout << "ERROR: unidentified data type" << std::endl;
}
else{
std::cout << "ERROR: unidentified file type" << std::endl;
|
4a6f666c
heziqi
Added mask method
|
540
541
|
exit(1);
}
|
2fcab4f0
David Mayerich
added unsifting f...
|
542
|
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
543
|
|
4a6f666c
heziqi
Added mask method
|
544
|
return false;
|
cacc3cdc
heziqi
attempt to fix CImg
|
545
546
|
}
|
2fcab4f0
David Mayerich
added unsifting f...
|
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
|
bool unsift(std::string outfile, unsigned char* mask, unsigned int samples, unsigned int lines){
//create a new header
envi_header new_header = header;
//set the number of lines and samples in the output file (that's all that changes)
new_header.lines = lines;
new_header.samples = samples;
new_header.save(outfile + ".hdr");
if (header.interleave == envi_header::BSQ){ //if the infile is bsq file
if (header.data_type == envi_header::float32)
return ((bsq<float>*)file)->unsift(outfile, mask, samples, lines);
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->unsift(outfile, mask, samples, lines);
else
std::cout << "ERROR: unidentified data type" << std::endl;
}
else if (header.interleave == envi_header::BIL){ //if the infile is bil file
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
568
|
|
2fcab4f0
David Mayerich
added unsifting f...
|
569
570
571
572
|
std::cout << "ERROR in stim::envi::unsift - BIL files aren't supported yet" << std::endl;
}
else if (header.interleave == envi_header::BIP){ //if the infile is bip file
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
573
|
|
8550e94f
David Mayerich
added sifting and...
|
574
575
576
577
578
579
|
if (header.data_type == envi_header::float32)
return ((bip<float>*)file)->unsift(outfile, mask, samples, lines);
else if (header.data_type == envi_header::float64)
return ((bip<double>*)file)->unsift(outfile, mask, samples, lines);
else
std::cout << "ERROR: unidentified data type" << std::endl;
|
2fcab4f0
David Mayerich
added unsifting f...
|
580
581
582
583
|
}
else{
std::cout << "ERROR: unidentified file type" << std::endl;
|
2fcab4f0
David Mayerich
added unsifting f...
|
584
|
}
|
cbce396e
David Mayerich
added support for...
|
585
|
return 0;
|
2fcab4f0
David Mayerich
added unsifting f...
|
586
587
|
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
588
589
590
591
592
593
594
595
596
|
/// Compute the ratio of two baseline-corrected peaks. The result is stored in a pre-allocated array.
/// @param lb1 is the label value for the left baseline point for the first peak (numerator)
/// @param rb1 is the label value for the right baseline point for the first peak (numerator)
/// @param pos1 is the label value for the first peak (numerator) position
/// @param lb2 is the label value for the left baseline point for the second peak (denominator)
/// @param rb2 is the label value for the right baseline point for the second peak (denominator)
/// @param pos2 is the label value for the second peak (denominator) position
/// @param result is a pointer to a pre-allocated array at least X * Y * sizeof(T) in size
|
70407ea9
heziqi
Ziqi completed he...
|
597
|
bool ph_to_ph(double lb1, double rb1, double pos1, double lb2, double rb2, double pos2, void * result){
|
20c212c0
heziqi
Ziqi added functi...
|
598
599
|
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
|
70407ea9
heziqi
Ziqi completed he...
|
600
|
return ((bsq<float>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (float*)result);
|
20c212c0
heziqi
Ziqi added functi...
|
601
|
else if(header.data_type == envi_header::float64)
|
70407ea9
heziqi
Ziqi completed he...
|
602
|
return ((bsq<double>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (double*)result);
|
20c212c0
heziqi
Ziqi added functi...
|
603
604
605
606
607
608
|
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
|
70407ea9
heziqi
Ziqi completed he...
|
609
|
return ((bil<float>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (float*)result);
|
20c212c0
heziqi
Ziqi added functi...
|
610
|
else if(header.data_type == envi_header::float64)
|
70407ea9
heziqi
Ziqi completed he...
|
611
|
return ((bil<double>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (double*)result);
|
20c212c0
heziqi
Ziqi added functi...
|
612
613
614
615
616
617
|
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
|
70407ea9
heziqi
Ziqi completed he...
|
618
|
return ((bip<float>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (float*)result);
|
20c212c0
heziqi
Ziqi added functi...
|
619
|
else if(header.data_type == envi_header::float64)
|
70407ea9
heziqi
Ziqi completed he...
|
620
621
622
623
624
625
626
627
628
629
630
631
|
return ((bip<double>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
632
633
634
635
636
637
638
639
640
|
/// Compute the ratio between a peak area and peak height.
/// @param lb1 is the label value for the left baseline point for the first peak (numerator)
/// @param rb1 is the label value for the right baseline point for the first peak (numerator)
/// @param pos1 is the label value for the first peak (numerator) position
/// @param lb2 is the label value for the left baseline point for the second peak (denominator)
/// @param rb2 is the label value for the right baseline point for the second peak (denominator)
/// @param pos2 is the label value for the second peak (denominator) position
/// @param result is a pointer to a pre-allocated array at least X * Y * sizeof(T) in size
|
70407ea9
heziqi
Ziqi completed he...
|
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
|
bool pa_to_ph(double lb1, double rb1, double lab1, double rab1, double lb2, double rb2, double pos, void * result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
676
677
678
679
680
681
682
683
684
|
/// Compute the ratio between two peak areas.
/// @param lb1 is the label value for the left baseline point for the first peak (numerator)
/// @param rb1 is the label value for the right baseline point for the first peak (numerator)
/// @param lab1 is the label value for the left bound (start of the integration) of the first peak (numerator)
/// @param rab1 is the label value for the right bound (end of the integration) of the first peak (numerator)
/// @param lb2 is the label value for the left baseline point for the second peak (denominator)
/// @param rb2 is the label value for the right baseline point for the second peak (denominator)
/// @param lab2 is the label value for the left bound (start of the integration) of the second peak (denominator)
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
685
|
/// @param rab2 is the label value for the right bound (end of the integration) of the second peak (denominator)
|
cb455f98
David Mayerich
removed old ENVI ...
|
686
|
/// @param result is a pointer to a pre-allocated array at least X * Y * sizeof(T) in size
|
70407ea9
heziqi
Ziqi completed he...
|
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
|
bool pa_to_pa(double lb1, double rb1, double lab1, double rab1,
double lb2, double rb2, double lab2, double rab2, void* result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (double*)result);
|
20c212c0
heziqi
Ziqi added functi...
|
712
713
714
715
716
717
718
719
720
721
722
|
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
723
724
725
726
727
728
729
|
/// Compute the centroid of a baseline corrected peak.
/// @param lb is the label value for the left baseline point
/// @param rb is the label value for the right baseline point
/// @param lab is the label for the start of the peak
/// @param rab is the label for the end of the peak
/// @param result is a pointer to a pre-allocated array at least X * Y * sizeof(T) in size
|
517876d6
heziqi
metrics finished ...
|
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
|
bool cpoint(double lb1, double rb1, double lab1, double rab1, void* result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->cpoint(lb1, rb1, lab1, rab1, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->cpoint(lb1, rb1, lab1, rab1, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->cpoint(lb1, rb1, lab1, rab1, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->cpoint(lb1, rb1, lab1, rab1, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->cpoint(lb1, rb1, lab1, rab1,(float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->cpoint(lb1, rb1, lab1, rab1, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
765
|
/// Closes the ENVI file.
|
6708cc25
heziqi
Ziqi added envi c...
|
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
|
bool close(){
if(header.interleave == envi_header::BSQ){
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->close();
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->close();
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->close();
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->close();
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIP){
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->close();
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->close();
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
|
e933c14e
David Mayerich
cleaned up the code
|
799
|
return false;
|
e8eb202f
David Mayerich
added a new ENVI ...
|
800
|
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
801
802
803
804
805
|
/// Retrieve a single pixel and stores it in pre-allocated memory.
/// @param p is a pointer to pre-allocated memory at least sizeof(T) in size.
/// @param n is an integer index to the pixel using linear array indexing.
|
bfe9c6db
heziqi
added feature_mat...
|
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
|
bool pixel(void * p, unsigned n){
if(header.interleave == envi_header::BSQ){
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->pixel((float*)p, n);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->pixel((double*)p, n);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->pixel((float*)p, n);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->pixel((double*)p, n);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIP){
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->pixel((float*)p, n);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->pixel((double*)p, n);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
return false;
}
|
e8eb202f
David Mayerich
added a new ENVI ...
|
839
|
|
cb455f98
David Mayerich
removed old ENVI ...
|
840
|
/// Saves a header file describing the current ENVI file parameters.
|
e8eb202f
David Mayerich
added a new ENVI ...
|
841
842
843
844
845
846
847
848
|
bool save_header(std::string filename){
//save the header file here
header.save(filename);
return true;
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
849
850
851
852
|
/// Retrieve a single band (by numerical label) and stores it in pre-allocated memory.
/// @param p is a pointer to an allocated region of memory at least X * Y * sizeof(T) in size.
/// @param wavelength is a floating point value (usually a wavelength in spectral data) used as a label for the band to be copied.
|
d1d8ef91
David Mayerich
added band readin...
|
853
854
855
856
857
|
bool band(void* ptr, double wavelength){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->band((float*)ptr, wavelength);
|
081f2c9f
heziqi
made bip bil file...
|
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
|
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->band((double*)ptr, wavelength);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIL){
if (header.data_type == envi_header::float32)
return ((bil<float>*)file)->band((float*)ptr, wavelength);
else if (header.data_type == envi_header::float64)
return ((bil<double>*)file)->band((double*)ptr, wavelength);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIP){
if (header.data_type == envi_header::float32)
return ((bip<float>*)file)->band((float*)ptr, wavelength);
else if (header.data_type == envi_header::float64)
return ((bip<double>*)file)->band((double*)ptr, wavelength);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
|
d1d8ef91
David Mayerich
added band readin...
|
884
|
}
|
ee4dea28
David Mayerich
fixed errors in c...
|
885
|
return false;
|
1582ce07
David Mayerich
added band_index(...
|
886
887
|
}
|
27b826a8
David Mayerich
added a spherical...
|
888
889
890
891
892
|
/// Retrieve a spectrum from the specified location
/// @param ptr is a pointer to pre-allocated memory of size B*sizeof(T)
/// @param x is the x-coordinate of the spectrum
/// @param y is the y-coordinate of the spectrum
|
724ec347
David Mayerich
simplified the EN...
|
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
|
bool spectrum(void* ptr, unsigned int x, unsigned int y){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->spectrum((float*)ptr, x, y);
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->spectrum((double*)ptr, x, y);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIL){
if (header.data_type == envi_header::float32)
return ((bil<float>*)file)->spectrum((float*)ptr, x, y);
else if (header.data_type == envi_header::float64)
return ((bil<double>*)file)->spectrum((double*)ptr, x, y);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIP){
if (header.data_type == envi_header::float32)
return ((bip<float>*)file)->spectrum((float*)ptr, x, y);
else if (header.data_type == envi_header::float64)
return ((bip<double>*)file)->spectrum((double*)ptr, x, y);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
return false;
}
|
cb455f98
David Mayerich
removed old ENVI ...
|
928
929
930
931
|
/// Retrieve a single band (based on index) and stores it in pre-allocated memory.
/// @param p is a pointer to an allocated region of memory at least X * Y * sizeof(T) in size.
/// @param page <= B is the integer number of the band to be copied.
|
1582ce07
David Mayerich
added band_index(...
|
932
|
bool band_index(void* ptr, unsigned int b){
|
081f2c9f
heziqi
made bip bil file...
|
933
934
|
if (header.interleave == envi_header::BSQ){ //if the infile is bsq file
if (header.data_type == envi_header::float32)
|
1582ce07
David Mayerich
added band_index(...
|
935
|
return ((bsq<float>*)file)->band_index((float*)ptr, b);
|
081f2c9f
heziqi
made bip bil file...
|
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
|
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->band_index((double*)ptr, b);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIL){
if (header.data_type == envi_header::float32)
return ((bil<float>*)file)->band_index((float*)ptr, b);
else if (header.data_type == envi_header::float64)
return ((bil<double>*)file)->band_index((double*)ptr, b);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIP){
if (header.data_type == envi_header::float32)
return ((bip<float>*)file)->band_index((float*)ptr, b);
else if (header.data_type == envi_header::float64)
return ((bip<double>*)file)->band_index((double*)ptr, b);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
|
1582ce07
David Mayerich
added band_index(...
|
962
963
|
}
return false;
|
d1d8ef91
David Mayerich
added band readin...
|
964
|
}
|
f92397d2
David Mayerich
fixed a Win32 bug...
|
965
|
|
cb455f98
David Mayerich
removed old ENVI ...
|
966
967
968
969
|
/// Helper function that loads a mask into memory given a filename.
/// @param mask is a pointer to pre-allocated memory of size X*Y
/// @param maskname is the file name for the image that will serve as the mask
|
2ed641f0
David Mayerich
removed the depen...
|
970
|
/*bool load_mask(unsigned char * mask, std::string maskname){
|
bfe9c6db
heziqi
added feature_mat...
|
971
|
//open the mask file
|
7b3948ab
David Mayerich
added support for...
|
972
|
stim::image<unsigned char> mask_image(maskname);
|
32504c2c
David Mayerich
fixed some functi...
|
973
|
mask_image.data_noninterleaved(mask);
|
bfe9c6db
heziqi
added feature_mat...
|
974
|
//save mask file into memory
|
32504c2c
David Mayerich
fixed some functi...
|
975
|
//memcpy(mask, mask_image.data_noninterleaved(), mask_image.size());
|
7b3948ab
David Mayerich
added support for...
|
976
|
//mask_image.clear();
|
bfe9c6db
heziqi
added feature_mat...
|
977
|
return true;
|
2ed641f0
David Mayerich
removed the depen...
|
978
|
}*/
|
d1d8ef91
David Mayerich
added band readin...
|
979
|
|
cb455f98
David Mayerich
removed old ENVI ...
|
980
981
982
983
|
/// Calculate the mean value for all masked (or valid) pixels in a band and returns the average spectrum
/// @param p is a pointer to pre-allocated memory of size [B * sizeof(T)] that stores the mean spectrum
/// @param mask is a pointer to memory of size [X * Y] that stores the mask value at each pixel location
|
a43c4fe1
heziqi
Added crop in env...
|
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
|
bool avg_band(void * p, unsigned char* mask){
if (header.interleave == envi_header::BSQ){
if (header.data_type == envi_header::float32)
return ((bsq<float>*)file)->avg_band((float*)p, mask);
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->avg_band((double*)p, mask);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIL){
if (header.data_type == envi_header::float32)
return ((bil<float>*)file)->avg_band((float*)p, mask);
else if (header.data_type == envi_header::float64)
return ((bil<double>*)file)->avg_band((double*)p, mask);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIP){
if (header.data_type == envi_header::float32)
return ((bip<float>*)file)->avg_band((float*)p, mask);
else if (header.data_type == envi_header::float64)
return ((bip<double>*)file)->avg_band((double*)p, mask);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
return false;
}
|
e8eb202f
David Mayerich
added a new ENVI ...
|
1017
|
|
cb455f98
David Mayerich
removed old ENVI ...
|
1018
1019
1020
1021
1022
|
/// Calculate the covariance matrix for all masked pixels in the image.
/// @param co is a pointer to pre-allocated memory of size [B * B] that stores the resulting covariance matrix
/// @param avg is a pointer to memory of size B that stores the average spectrum
/// @param mask is a pointer to memory of size [X * Y] that stores the mask value at each pixel location
|
a43c4fe1
heziqi
Added crop in env...
|
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
|
bool co_matrix(void* co, void* avg, unsigned char* mask){
if (header.interleave == envi_header::BSQ){
if (header.data_type == envi_header::float32)
return ((bsq<float>*)file)->co_matrix((float*)co, (float*)avg, mask);
else if (header.data_type == envi_header::float64)
return ((bsq<double>*)file)->co_matrix((double*)co, (double*)avg, mask);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIL){
if (header.data_type == envi_header::float32)
return ((bil<float>*)file)->co_matrix((float*)co, (float*)avg, mask);
else if (header.data_type == envi_header::float64)
return ((bil<double>*)file)->co_matrix((double*)co, (double*)avg, mask);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIP){
if (header.data_type == envi_header::float32)
return ((bip<float>*)file)->co_matrix((float*)co, (float*)avg, mask);
else if (header.data_type == envi_header::float64)
return ((bip<double>*)file)->co_matrix((double*)co, (double*)avg, mask);
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
return false;
}
|
0df38ff3
heziqi
fixed head detached
|
1056
|
|
e8eb202f
David Mayerich
added a new ENVI ...
|
1057
|
|
cb455f98
David Mayerich
removed old ENVI ...
|
1058
1059
1060
1061
1062
1063
1064
|
/// Crop a region of the image and save it to a new file.
/// @param outfile is the file name for the new cropped image
/// @param x0 is the lower-left x pixel coordinate to be included in the cropped image
/// @param y0 is the lower-left y pixel coordinate to be included in the cropped image
/// @param x1 is the upper-right x pixel coordinate to be included in the cropped image
/// @param y1 is the upper-right y pixel coordinate to be included in the cropped image
|
e9bddc57
David Mayerich
added band croppi...
|
1065
|
bool crop(std::string outfile,unsigned x0, unsigned y0, unsigned x1, unsigned y1, unsigned b0, unsigned b1){
|
a43c4fe1
heziqi
Added crop in env...
|
1066
|
|
177c7863
David Mayerich
updated the ENVI ...
|
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
|
//save the header for the cropped file
stim::envi_header new_header = header;
new_header.samples = x1 - x0;
new_header.lines = y1 - y0;
new_header.bands = b1 - b0;
std::vector<double>::const_iterator first = new_header.wavelength.begin() + b0;
std::vector<double>::const_iterator last = new_header.wavelength.begin() + b1;
new_header.wavelength = std::vector<double>(first, last);
new_header.save(outfile + ".hdr");
|
a43c4fe1
heziqi
Added crop in env...
|
1077
1078
|
if (header.interleave == envi_header::BSQ){
if (header.data_type == envi_header::float32)
|
e9bddc57
David Mayerich
added band croppi...
|
1079
|
return ((bsq<float>*)file)->crop(outfile, x0, y0, x1, y1, b0, b1);
|
a43c4fe1
heziqi
Added crop in env...
|
1080
|
else if (header.data_type == envi_header::float64)
|
e9bddc57
David Mayerich
added band croppi...
|
1081
|
return ((bsq<double>*)file)->crop(outfile, x0, y0, x1, y1, b0, b1);
|
a43c4fe1
heziqi
Added crop in env...
|
1082
1083
1084
1085
1086
1087
1088
|
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIL){
if (header.data_type == envi_header::float32)
|
e9bddc57
David Mayerich
added band croppi...
|
1089
|
return ((bil<float>*)file)->crop(outfile, x0, y0, x1, y1, b0, b1);
|
a43c4fe1
heziqi
Added crop in env...
|
1090
|
else if (header.data_type == envi_header::float64)
|
e9bddc57
David Mayerich
added band croppi...
|
1091
|
return ((bil<double>*)file)->crop(outfile, x0, y0, x1, y1, b0, b1);
|
a43c4fe1
heziqi
Added crop in env...
|
1092
1093
1094
1095
1096
1097
1098
|
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
else if (header.interleave == envi_header::BIP){
if (header.data_type == envi_header::float32)
|
e9bddc57
David Mayerich
added band croppi...
|
1099
|
return ((bip<float>*)file)->crop(outfile, x0, y0, x1, y1, b0, b1);
|
a43c4fe1
heziqi
Added crop in env...
|
1100
|
else if (header.data_type == envi_header::float64)
|
e9bddc57
David Mayerich
added band croppi...
|
1101
|
return ((bip<double>*)file)->crop(outfile, x0, y0, x1, y1, b0, b1);
|
a43c4fe1
heziqi
Added crop in env...
|
1102
1103
1104
1105
1106
1107
1108
|
else{
std::cout << "ERROR: unidentified data type" << std::endl;
exit(1);
}
}
return false;
}
|
0df38ff3
heziqi
fixed head detached
|
1109
|
|
e8eb202f
David Mayerich
added a new ENVI ...
|
1110
1111
1112
1113
1114
|
};
} //end namespace rts
#endif
|