optics / imie

Blame view

globals.h 2.45 KB
Edit Raw Normal View History
da3d4e0e   dmayerich   Initial commit. 
1
2
3
4
5
6
7
8
9
10
 
  #ifndef GLOBALS_H
  #define GLOBALS_H
  
  #include <vector>
  #include <string>
  #include <iostream>
  #include "PerformanceData.h"
  #include <complex>
  using namespace std;
52a5fe9d   dmayerich   Added double supp... 
11
12
 
  typedef float rtsFloat;
da3d4e0e   dmayerich   Initial commit. 
13
 
  struct SpecPair{
52a5fe9d   dmayerich   Added double supp... 
14
15
 
  	double nu;
  	double A;
da3d4e0e   dmayerich   Initial commit. 
16
17
18
 
  };
  
  struct Material{
52a5fe9d   dmayerich   Added double supp... 
19
20
 
  	vector<double> nu;
  	vector<complex<double>> eta;
da3d4e0e   dmayerich   Initial commit. 
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
 
  	string name;
  };
  
  enum SpecType {AbsorbanceSpecType, IntensitySpecType};
  enum OpticsType {TransmissionOpticsType, ReflectionOpticsType};
  
  extern PerformanceData PD;
  
  
  extern vector<vector<SpecPair>> RefSpectrum;
  extern int currentSpec;
  extern vector<SpecPair> SimSpectrum;
  
  //IO Functions
  vector<SpecPair> LoadSpectrum(string filename);
  vector<SpecPair> SetReferenceSpectrum(char* text);
  void SaveState();
  void LoadState();
  void SetDefaults();
  void SaveSimulation(string fileName);
  void SaveK(string fileName);
  void SaveN(string fileName);
  void LoadMaterial(string fileNameK, string fileNameN, string materialName);
  void LoadMaterial(string fileNameK, string materialName);
  
  //Display Functions
  void FitDisplay();
  
  //Update Functions
  void UpdateDisplay();
  void SimulateSpectrum();
52a5fe9d   dmayerich   Added double supp... 
52
53
54
 
  void cudaKramersKronig(double* cpuN, double* cpuK, int nVals, double nuStart, double nuEnd, double nOffset);
  void cudaComputeSpectrum(double* cpuI, double* cpuB, double* alpha,
  						 int Nl, int nLambda, double oThetaI, double oThetaO, double cThetaI, double cThetaO, int nSamples);
da3d4e0e   dmayerich   Initial commit. 
55
56
 
  
  //Window Parameters
52a5fe9d   dmayerich   Added double supp... 
57
58
59
60
61
 
  extern double nuMin;
  extern double nuMax;
  extern double aMin;
  extern double aMax;
  extern double dNu;
da3d4e0e   dmayerich   Initial commit. 
62
63
64
65
66
67
68
69
 
  extern bool dispRefSpec;
  extern bool dispSimSpec;
  extern bool dispSimK;
  extern bool dispMatK;
  extern bool dispSimN;
  extern bool dispMatN;
  extern SpecType dispSimType;
  extern bool dispNormalize;
52a5fe9d   dmayerich   Added double supp... 
70
 
  extern double dispNormFactor;
da3d4e0e   dmayerich   Initial commit. 
71
72
52a5fe9d   dmayerich   Added double supp... 
73
74
 
  extern double dispScaleK;
  extern double dispScaleN;
da3d4e0e   dmayerich   Initial commit. 
75
76
 
  
  //material parameters
52a5fe9d   dmayerich   Added double supp... 
77
78
79
 
  extern double radius;
  extern double baseIR;
  extern double cA;
da3d4e0e   dmayerich   Initial commit. 
80
81
82
83
84
85
86
87
88
89
90
 
  extern vector<SpecPair> EtaK;
  extern vector<SpecPair> EtaN;
  extern bool applyMaterial;
  //extern vector<SpecPair> KMaterial;
  //extern vector<SpecPair> NMaterial;
  extern vector<Material> MaterialList;
  extern int currentMaterial;
  void ChangeAbsorbance();
  void SetMaterial();
  
  //optical parameters
52a5fe9d   dmayerich   Added double supp... 
91
92
93
94
 
  extern double cNAi;
  extern double cNAo;
  extern double oNAi;
  extern double oNAo;
da3d4e0e   dmayerich   Initial commit. 
95
96
97
98
99
 
  extern OpticsType opticsMode;
  extern bool pointDetector;
  extern int objectiveSamples;
  
  //fitting parameters
52a5fe9d   dmayerich   Added double supp... 
100
 
  extern double minMSE;
da3d4e0e   dmayerich   Initial commit. 
101
102
 
  extern int maxFitIter;
  void EstimateMaterial();
52a5fe9d   dmayerich   Added double supp... 
103
104
 
  extern double scaleI0;
  extern double refSlope;
da3d4e0e   dmayerich   Initial commit. 
105
52a5fe9d   dmayerich   Added double supp... 
106
 
  double ComputeDistortion();
da3d4e0e   dmayerich   Initial commit. 
107
108
109
110
 
  void MinimizeDistortion();
  
  
  #endif