diff --git a/CMakeLists.txt b/CMakeLists.txt
index a7b82f4..1a299a7 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -52,8 +52,10 @@ file(GLOB SRC_CU "*.cu")
 
 #set up copying data files
 configure_file(kPMMA.txt ${CMAKE_CURRENT_BINARY_DIR}/kPMMA.txt @ONLY)
+configure_file(eta_polystyreneK.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_polystyreneK.txt @ONLY)
 configure_file(eta_TolueneK.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_TolueneK.txt @ONLY)
 configure_file(eta_TolueneN.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_TolueneN.txt @ONLY)
+configure_file(source_midIR.txt ${CMAKE_CURRENT_BINARY_DIR}/source_midIR.txt @ONLY)
 
 #determine which source files have to be moc'd
 Qt4_wrap_cpp(UI_MOC ${SRC_H})
diff --git a/FileIO.cpp b/FileIO.cpp
index 8e5ddff..21d7796 100644
--- a/FileIO.cpp
+++ b/FileIO.cpp
@@ -14,7 +14,7 @@ vector<SpecPair> LoadSpectrum(string filename)
 	//open the file
 	ifstream inFile(filename.c_str());
 
-
+	//read all elements of the file
 	SpecPair temp;
 	while(!inFile.eof()){
 		inFile>>temp.nu;
@@ -55,6 +55,7 @@ vector<SpecPair> LoadSpectrum(string filename)
 			while(j < (int)S.size()-1 && S[j].nu <= nu)
 				j++;
 
+
 			lowVal = S[j-1].nu;
 			highVal = S[j].nu;
 			a = (nu - lowVal)/(highVal - lowVal);
diff --git a/SimulateSpectrum.cpp b/SimulateSpectrum.cpp
index 52a33af..bc7629d 100644
--- a/SimulateSpectrum.cpp
+++ b/SimulateSpectrum.cpp
@@ -2,7 +2,7 @@
 #include <complex>
 #include <iostream>
 #include <fstream>
-#include "globals.h"
+#include "globals.h"
 #include <QProgressDialog>
 #include <stdlib.h>
 //#include "cufft.h"
@@ -352,11 +352,16 @@ void updateSpectrum(double* I, double I0, int n)
 
 		//set the spectrum value based on the current display type
 		if(dispSimType == AbsorbanceSpecType)
+		{
 			temp.A = -log10(I[i]/I0);
-		else
+			//cout<<temp.nu<<"    "<<I[i]<<endl;
+		}
+		else
 		{
-			temp.A = I[i];
-        }
+			temp.A = I[i];
+			if(useSourceSpectrum)
+				temp.A *= SourceResampled[i].A;
+		}
 
 		SimSpectrum.push_back(temp);
 	}
@@ -457,6 +462,7 @@ void gpuDetectorSpectrum(int numSamples)
 	computeBArray(B, Nl, nLambda);
 
 
+
 	//allocate temporary space for the spectrum
 	double* I = (double*)malloc(sizeof(double) * EtaK.size());
 
@@ -525,14 +531,14 @@ double intensityDistortion(){
 void DistortionMap(float* distortionMap, int nSteps){
 	ofstream outFile("distortion.txt");
 
-	//set the parameters for the distortion simulation
+	//set the parameters for the distortion simulation
 	double range = 0.4;
 	double step = (range)/(nSteps-1);
 
 	oNAi = 0.2;
-	oNAo = 0.5;
-
-	double startNAi = 0.0;
+	oNAo = 0.5;
+
+	double startNAi = 0.0;
 	double startNAo = 0.3;
 
 	//compute the optical parameters
@@ -553,24 +559,24 @@ void DistortionMap(float* distortionMap, int nSteps){
 	complex<double>* B = (complex<double>*)malloc(sizeof(complex<double>) * Nl * nLambda);
 	computeBArray(B, Nl, nLambda);
 
-    QProgressDialog progress("Computing distortion map...", "Stop", 0, nSteps * nSteps);
+    QProgressDialog progress("Computing distortion map...", "Stop", 0, nSteps * nSteps);
     progress.setWindowModality(Qt::WindowModal);
 
 	double D;
-	double e = 0.001;
-	int i, o;
-	for(i=0; i<nSteps; i++)
-	{
+	double e = 0.001;
+	int i, o;
+	for(i=0; i<nSteps; i++)
+	{
         for(o=0; o<nSteps; o++)
-		{
-            //update the progress bar and check for an exit
-            progress.setValue(i * nSteps + o);
-            if (progress.wasCanceled())
-                break;
+		{
+            //update the progress bar and check for an exit
+            progress.setValue(i * nSteps + o);
+            if (progress.wasCanceled())
+                break;
 
             //set the current optical parameters
 			cNAi = startNAi + i * step;
-			cNAo = startNAo + o * step;
+			cNAo = startNAo + o * step;
 			//cout<<cNAi<<"   "<<cNAo<<endl;
 
 			//set the current optical parameters
@@ -597,15 +603,15 @@ void DistortionMap(float* distortionMap, int nSteps){
 					D = -1.0;
 				else
 					D = intensityDistortion();
-			}
+			}
 			distortionMap[o * nSteps + i] = D;
 			outFile<<D<<"       ";
 		}
 		outFile<<endl;
-		//cout<<i<<endl;
+		//cout<<i<<endl;
     }
-
-	progress.setValue(nSteps * nSteps);
+
+	progress.setValue(nSteps * nSteps);
 
 	outFile.close();
-}
+}
diff --git a/cudaKK.h b/cudaKK.h
index 203cf1f..7f8028d 100644
--- a/cudaKK.h
+++ b/cudaKK.h
@@ -58,7 +58,7 @@ __global__ void devComputeSpectrum(double* I, double2* B, double* alpha, int Nl,
 								   int nSamples, int nLambda, double oThetaI, double oThetaO, double cThetaI, double cThetaO)
 {
 	int i = blockIdx.x * blockDim.x + threadIdx.x;
-	if(i >= nLambda-1)
+	if(i >= nLambda)
         return;
 
 	//compute the delta-theta value
@@ -155,6 +155,7 @@ void cudaComputeSpectrum(double* cpuI, double* cpuB, double* cpuAlpha,
 	HANDLE_ERROR(cudaMalloc(&gpuB, sizeof(double2) * nLambda * Nl));
 	HANDLE_ERROR(cudaMemcpy(gpuB, cpuB, sizeof(double2) * nLambda * Nl, cudaMemcpyHostToDevice));
 
+
 	double* gpuAlpha;
 	HANDLE_ERROR(cudaMalloc(&gpuAlpha, sizeof(double) * Nl));
 	HANDLE_ERROR(cudaMemcpy(gpuAlpha, cpuAlpha, sizeof(double) * Nl, cudaMemcpyHostToDevice));
diff --git a/eta_polystyreneK.txt b/eta_polystyreneK.txt
new file mode 100644
index 0000000..726195d
--- /dev/null
+++ b/eta_polystyreneK.txt
@@ -0,0 +1,1609 @@
+898.826141	0.019116
+900.754953	0.055527
+902.683764	0.098452
+904.612576	0.136831
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+3954.063498	0.244113
+3955.992309	0.24393
+3957.921121	0.243837
+3959.849932	0.244301
+3961.778744	0.244997
+3963.707555	0.24535
+3965.636367	0.245396
+3967.565178	0.24548
+3969.49399	0.2458
+3971.422801	0.24641
+3973.351613	0.246738
+3975.280424	0.247094
+3977.209235	0.247439
+3979.138047	0.247471
+3981.066858	0.247241
+3982.99567	0.246602
+3984.924481	0.24633
+3986.853293	0.246618
+3988.782104	0.247495
+3990.710916	0.248448
+3992.639727	0.249797
+3994.568539	0.251938
+3996.49735	0.253329
+3998.426162	0.25474
+4000.354973	0.256031
diff --git a/globals.h b/globals.h
index 6a7474d..8b742d2 100644
--- a/globals.h
+++ b/globals.h
@@ -4,7 +4,7 @@
 #include <vector>
 #include <string>
 #include <iostream>
-#include "PerformanceData.h"
+#include "PerformanceData.h"
 #include <complex>
 using namespace std;
 
@@ -80,13 +80,17 @@ extern double cA;
 extern vector<SpecPair> EtaK;
 extern vector<SpecPair> EtaN;
 extern bool applyMaterial;
-//extern vector<SpecPair> KMaterial;
-//extern vector<SpecPair> NMaterial;
 extern vector<Material> MaterialList;
 extern int currentMaterial;
 void ChangeAbsorbance();
 void SetMaterial();
 
+//source parameters
+extern vector<SpecPair> SourceSpectrum;
+extern vector<SpecPair> SourceResampled;
+void ResampleSource();	//resample a source profile to match the sample points of the current material
+extern bool useSourceSpectrum;
+
 //optical parameters
 extern double cNAi;
 extern double cNAo;
@@ -102,13 +106,13 @@ extern int maxFitIter;
 void EstimateMaterial();
 extern double scaleI0;
 extern double refSlope;
-
-
+
+
 //distortion maps
 double ComputeDistortion();
-void DistortionMap(float* distortionMap, int nSteps);
-
+void DistortionMap(float* distortionMap, int nSteps);
+
 
 
 
-#endif
+#endif
diff --git a/interactivemie.h b/interactivemie.h
index 0755ec7..2644ed0 100644
--- a/interactivemie.h
+++ b/interactivemie.h
@@ -5,19 +5,19 @@
 #include <QDragEnterEvent>
 #include <qfiledialog.h>
 #include <qinputdialog.h>
-#include "ui_interactivemie.h"
+#include "ui_interactivemie.h"
 #include "qtDistortionDialog.h"
-#include "globals.h"
-
-extern qtDistortionDialog* distortionDialog;
-
+#include "globals.h"
+
+extern qtDistortionDialog* distortionDialog;
+
 class InteractiveMie : public QMainWindow
 {
 	Q_OBJECT
 
 public:
 	InteractiveMie(QWidget *parent = 0, Qt::WFlags flags = 0);
-	~InteractiveMie();
+	~InteractiveMie();
 	void closeEvent(QCloseEvent *event);
 	bool updating;
 
@@ -290,8 +290,8 @@ public slots:
 	}
 	void on_btnDistortion_clicked(){
 		//ComputeDistortion();
-		//DistortionMap();
-		cout<<"Distortion"<<endl;
+		//DistortionMap();
+		cout<<"Distortion"<<endl;
 		distortionDialog->show();
 	}
 	void on_btnTimings_clicked(){
@@ -332,6 +332,16 @@ public slots:
 		//add the new material to the combo box
 		refreshUI();
 	}
+	void on_mnuLoadSource_triggered(){
+		cout<<"Load source."<<endl;
+	}
+	void on_chkSourceSpectrum_clicked(bool b){
+		
+		useSourceSpectrum = b;
+		SimulateSpectrum();
+		UpdateDisplay();
+		
+	}
 
 	void on_mnuSaveSim_triggered(){
 		//first load the imaginary part
diff --git a/interactivemie.ui b/interactivemie.ui
index d85c580..40a2705 100644
--- a/interactivemie.ui
+++ b/interactivemie.ui
@@ -6,8 +6,8 @@
    <rect>
     <x>0</x>
     <y>0</y>
-    <width>511</width>
-    <height>525</height>
+    <width>502</width>
+    <height>607</height>
    </rect>
   </property>
   <property name="acceptDrops">
@@ -21,9 +21,9 @@
     <property name="geometry">
      <rect>
       <x>20</x>
-      <y>140</y>
+      <y>170</y>
       <width>151</width>
-      <height>181</height>
+      <height>161</height>
      </rect>
     </property>
     <property name="title">
@@ -154,8 +154,8 @@
      <rect>
       <x>20</x>
       <y>10</y>
-      <width>241</width>
-      <height>131</height>
+      <width>261</width>
+      <height>151</height>
      </rect>
     </property>
     <property name="title">
@@ -164,7 +164,7 @@
     <widget class="QLabel" name="label_7">
      <property name="geometry">
       <rect>
-       <x>5</x>
+       <x>15</x>
        <y>50</y>
        <width>81</width>
        <height>20</height>
@@ -177,7 +177,7 @@
     <widget class="QDoubleSpinBox" name="spinCondNAi">
      <property name="geometry">
       <rect>
-       <x>90</x>
+       <x>110</x>
        <y>20</y>
        <width>62</width>
        <height>22</height>
@@ -193,7 +193,7 @@
     <widget class="QLabel" name="label_6">
      <property name="geometry">
       <rect>
-       <x>5</x>
+       <x>15</x>
        <y>20</y>
        <width>91</width>
        <height>20</height>
@@ -206,7 +206,7 @@
     <widget class="QDoubleSpinBox" name="spinCondNAo">
      <property name="geometry">
       <rect>
-       <x>160</x>
+       <x>190</x>
        <y>20</y>
        <width>62</width>
        <height>22</height>
@@ -225,7 +225,7 @@
     <widget class="QDoubleSpinBox" name="spinObjNAo">
      <property name="geometry">
       <rect>
-       <x>160</x>
+       <x>190</x>
        <y>50</y>
        <width>62</width>
        <height>22</height>
@@ -244,7 +244,7 @@
     <widget class="QDoubleSpinBox" name="spinObjNAi">
      <property name="geometry">
       <rect>
-       <x>90</x>
+       <x>110</x>
        <y>50</y>
        <width>62</width>
        <height>22</height>
@@ -260,7 +260,7 @@
     <widget class="QRadioButton" name="radTransmissionOptics">
      <property name="geometry">
       <rect>
-       <x>20</x>
+       <x>30</x>
        <y>80</y>
        <width>111</width>
        <height>17</height>
@@ -276,7 +276,7 @@
     <widget class="QRadioButton" name="radReflectionOptics">
      <property name="geometry">
       <rect>
-       <x>150</x>
+       <x>170</x>
        <y>80</y>
        <width>91</width>
        <height>17</height>
@@ -289,9 +289,9 @@
     <widget class="QCheckBox" name="chkPointDetector">
      <property name="geometry">
       <rect>
-       <x>150</x>
+       <x>170</x>
        <y>100</y>
-       <width>101</width>
+       <width>91</width>
        <height>17</height>
       </rect>
      </property>
@@ -302,9 +302,9 @@
     <widget class="QSpinBox" name="spinObjectiveSamples">
      <property name="geometry">
       <rect>
-       <x>1</x>
+       <x>10</x>
        <y>100</y>
-       <width>51</width>
+       <width>61</width>
        <height>22</height>
       </rect>
      </property>
@@ -318,7 +318,7 @@
     <widget class="QLabel" name="label_12">
      <property name="geometry">
       <rect>
-       <x>60</x>
+       <x>80</x>
        <y>100</y>
        <width>81</width>
        <height>16</height>
@@ -328,13 +328,26 @@
       <string>Obj. Samples</string>
      </property>
     </widget>
+    <widget class="QCheckBox" name="chkSourceSpectrum">
+     <property name="geometry">
+      <rect>
+       <x>30</x>
+       <y>130</y>
+       <width>141</width>
+       <height>19</height>
+      </rect>
+     </property>
+     <property name="text">
+      <string>Source Spectrum</string>
+     </property>
+    </widget>
    </widget>
    <widget class="QGroupBox" name="groupBox_3">
     <property name="geometry">
      <rect>
-      <x>280</x>
-      <y>20</y>
-      <width>181</width>
+      <x>290</x>
+      <y>10</y>
+      <width>191</width>
       <height>411</height>
      </rect>
     </property>
@@ -346,7 +359,7 @@
       <rect>
        <x>80</x>
        <y>70</y>
-       <width>71</width>
+       <width>101</width>
        <height>22</height>
       </rect>
      </property>
@@ -406,7 +419,7 @@
       <rect>
        <x>80</x>
        <y>40</y>
-       <width>71</width>
+       <width>101</width>
        <height>22</height>
       </rect>
      </property>
@@ -469,7 +482,7 @@
       <rect>
        <x>10</x>
        <y>230</y>
-       <width>151</width>
+       <width>171</width>
        <height>17</height>
       </rect>
      </property>
@@ -485,7 +498,7 @@
       <rect>
        <x>10</x>
        <y>170</y>
-       <width>151</width>
+       <width>161</width>
        <height>17</height>
       </rect>
      </property>
@@ -517,7 +530,7 @@
       <rect>
        <x>80</x>
        <y>100</y>
-       <width>71</width>
+       <width>101</width>
        <height>22</height>
       </rect>
      </property>
@@ -552,7 +565,7 @@
       <rect>
        <x>80</x>
        <y>130</y>
-       <width>71</width>
+       <width>101</width>
        <height>22</height>
       </rect>
      </property>
@@ -652,7 +665,7 @@
       <rect>
        <x>10</x>
        <y>380</y>
-       <width>70</width>
+       <width>91</width>
        <height>17</height>
       </rect>
      </property>
@@ -665,7 +678,7 @@
       <rect>
        <x>50</x>
        <y>190</y>
-       <width>101</width>
+       <width>111</width>
        <height>17</height>
       </rect>
      </property>
@@ -709,8 +722,8 @@
    <widget class="QPushButton" name="btnFit">
     <property name="geometry">
      <rect>
-      <x>180</x>
-      <y>150</y>
+      <x>190</x>
+      <y>190</y>
       <width>75</width>
       <height>23</height>
      </rect>
@@ -722,8 +735,8 @@
    <widget class="QPushButton" name="btnSave">
     <property name="geometry">
      <rect>
-      <x>180</x>
-      <y>180</y>
+      <x>190</x>
+      <y>220</y>
       <width>75</width>
       <height>23</height>
      </rect>
@@ -735,8 +748,8 @@
    <widget class="QPushButton" name="btnReset">
     <property name="geometry">
      <rect>
-      <x>180</x>
-      <y>210</y>
+      <x>190</x>
+      <y>250</y>
       <width>75</width>
       <height>23</height>
      </rect>
@@ -751,8 +764,8 @@
     </property>
     <property name="geometry">
      <rect>
-      <x>180</x>
-      <y>240</y>
+      <x>190</x>
+      <y>280</y>
       <width>75</width>
       <height>23</height>
      </rect>
@@ -764,8 +777,8 @@
    <widget class="QPushButton" name="btnTimings">
     <property name="geometry">
      <rect>
-      <x>180</x>
-      <y>270</y>
+      <x>190</x>
+      <y>310</y>
       <width>75</width>
       <height>23</height>
      </rect>
@@ -778,7 +791,7 @@
     <property name="geometry">
      <rect>
       <x>20</x>
-      <y>320</y>
+      <y>340</y>
       <width>201</width>
       <height>111</height>
      </rect>
@@ -818,9 +831,9 @@
     <widget class="QDoubleSpinBox" name="spinError">
      <property name="geometry">
       <rect>
-       <x>20</x>
+       <x>0</x>
        <y>70</y>
-       <width>71</width>
+       <width>101</width>
        <height>22</height>
       </rect>
      </property>
@@ -883,8 +896,8 @@
     <rect>
      <x>0</x>
      <y>0</y>
-     <width>511</width>
-     <height>25</height>
+     <width>502</width>
+     <height>22</height>
     </rect>
    </property>
    <widget class="QMenu" name="menuFile">
@@ -893,6 +906,7 @@
     </property>
     <addaction name="mnuLoadReference"/>
     <addaction name="mnuLoadMaterial"/>
+    <addaction name="mnuLoadSource"/>
    </widget>
    <widget class="QMenu" name="menuSave">
     <property name="title">
@@ -945,6 +959,11 @@
     <string>n</string>
    </property>
   </action>
+  <action name="mnuLoadSource">
+   <property name="text">
+    <string>Load Source Spectrum</string>
+   </property>
+  </action>
  </widget>
  <layoutdefault spacing="6" margin="11"/>
  <resources>
diff --git a/main.cpp b/main.cpp
index ac06f65..8c12d47 100644
--- a/main.cpp
+++ b/main.cpp
@@ -1,10 +1,12 @@
 #include <fstream>
+#include <iostream>
 using namespace std;
 #include "interactivemie.h"
-#include <QtGui/QApplication>
-#include <QGraphicsScene>
-#include <QGraphicsView>
+#include <QtGui/QApplication>
+#include <QGraphicsScene>
+#include <QGraphicsView>
 #include <QGraphicsPixmapItem>
+#include <QLayout>
 #include "qtSpectrumDisplay.h"
 #include "globals.h"
 #include "rtsGUIConsole.h"
@@ -14,16 +16,24 @@ using namespace std;
 
 PerformanceData PD;
 
-qtSpectrumDisplay* gpSpectrumDisplay;
-
-QGraphicsScene* distortionScene = NULL;
-QGraphicsView* distortionWindow = NULL;
+qtSpectrumDisplay* gpSpectrumDisplay;
+
+QGraphicsScene* distortionScene = NULL;
+QGraphicsView* distortionWindow = NULL;
 QGraphicsPixmapItem* pixmapItem = NULL;
 
 vector<vector<SpecPair> > RefSpectrum;
 vector<SpecPair> SimSpectrum;
 vector<SpecPair> EtaK;
 vector<SpecPair> EtaN;
+
+//source spectrum
+bool useSourceSpectrum = false;
+vector<SpecPair> SourceSpectrum;
+
+//resample the source based on the material samples (EtaK and EtaN)
+vector<SpecPair> SourceResampled;
+
 int currentSpec = 0;
 
 double nuMin = 800;
@@ -109,7 +119,6 @@ void LoadMaterial(string fileNameK, string fileNameN, string materialName)
 		newMaterial.eta.push_back(eta);
 	}
 	MaterialList.push_back(newMaterial);
-
 }
 
 void LoadMaterial(string fileNameK, string materialName){
@@ -149,6 +158,49 @@ void LoadMaterial(string fileNameK, string materialName){
 	MaterialList.push_back(newMaterial);
 }
 
+void LoadSource(string fileNameSource)
+{
+	SourceSpectrum = LoadSpectrum(fileNameSource);  
+}
+
+void ResampleSource()
+{
+	//clear the current resampled spectrum
+	SourceResampled.clear();
+	
+	//get the number of source and material samples
+	int nMatSamples = EtaK.size();
+	int nSourceSamples = SourceSpectrum.size();
+	
+	float nu, I;
+	for(int i=0; i<nMatSamples; i++)
+	{
+		SpecPair newSample;
+		newSample.nu = EtaK[i].nu;
+		
+		//iterate through the SourceSpectrum to find the bounding wavelengths
+		if(newSample.nu < SourceSpectrum[0].nu)
+			newSample.A = 0.0;
+		else if(newSample.nu > SourceSpectrum[nSourceSamples-1].nu)
+			newSample.A = 0.0;
+		else
+		{
+			int k=1;
+			while(SourceSpectrum[k].nu < newSample.nu)
+				k++;
+			
+			//interpolate
+			float a = (newSample.nu - SourceSpectrum[k-1].nu)/(SourceSpectrum[k].nu - SourceSpectrum[k-1].nu);
+			newSample.A = a * SourceSpectrum[k].A + (1.0 - a) * SourceSpectrum[k-1].A;
+		}
+		
+		//insert the new spectral point into the resampled spectrum
+		SourceResampled.push_back(newSample);
+		//cout<<newSample.nu<<"   "<<newSample.A<<endl;
+	}
+  
+}
+
 void FitDisplay(){
 	double minA = 99999.0;
 	double maxA = -99999.0;
@@ -280,6 +332,10 @@ void SetMaterial()
 			EtaN.push_back(temp);
 	}
 	cA = 1.0;
+	
+	//resample the source spectrum
+	if(SourceSpectrum.size() != 0)
+		ResampleSource();
 
 }
 
@@ -295,42 +351,48 @@ int main(int argc, char *argv[])
 	//load the default materials
 	LoadMaterial("eta_TolueneK.txt", "eta_TolueneN.txt", "Toluene");
 	LoadMaterial("kPMMA.txt", "PMMA");
+	LoadMaterial("eta_polystyreneK.txt", "Polystyrene");
 	//LoadMaterial("../../../../data/materials/rtsSU8_k.txt", "../../../../data/materials/rtsSU8_n.txt", "SU8");
 	SetMaterial();
+	
+	//load a mid-infrared source
+	LoadSource("source_midIR.txt");
+	ResampleSource();
 
 	//compute the analytical solution for the Mie scattered spectrum
 	SimulateSpectrum();
 
-	QApplication a(argc, argv);
-
-	//create and position the UI window
+	QApplication a(argc, argv);
+	
 	InteractiveMie w;
-	w.show();
+	w.show() ;
 	w.move(0, 0);
-	QRect uiFrame = w.frameGeometry();
-	QRect uiNoFrame = w.geometry();
+	QSize uiFrame = w.frameSize() + QSize(10, 10);
+	cout<<"Frame: "<<uiFrame.width()<<endl;
+	QSize uiNoFrame = w.size();
+	cout<<"No Frame: "<<uiNoFrame.width()<<endl;
 	int frameHeight = uiFrame.height() - uiNoFrame.height();
 
 	//activate a console for output
-	RedirectIOToConsole(0, uiFrame.height(), uiFrame.width(), 400);
-	printf("Frame height: %d\n", frameHeight);
-
-	//set the size and position of the spectrum window
+	RedirectIOToConsole(0, uiFrame.height(), uiFrame.width(), 400);
+	printf("Frame height: %d\n", frameHeight);
+
+	//set the size and position of the spectrum window
 	int visWinSize = uiFrame.height()/2 - frameHeight;
 	//create the far field window
 	gpSpectrumDisplay = new qtSpectrumDisplay();
 	gpSpectrumDisplay->resize(visWinSize*2, visWinSize);
 	gpSpectrumDisplay->move(uiFrame.width(), 0);
-	gpSpectrumDisplay->show();
-
-	//distortion dialog box
-	distortionDialog = new qtDistortionDialog();
-	distortionDialog->move(0, 0);
-
-	//display the distortion map
-	distortionScene = new QGraphicsScene();
-	distortionWindow = new QGraphicsView(distortionScene);
-	distortionWindow->move(uiFrame.width(), visWinSize);
+	gpSpectrumDisplay->show();
+
+	//distortion dialog box
+	distortionDialog = new qtDistortionDialog();
+	distortionDialog->move(0, 0);
+
+	//display the distortion map
+	distortionScene = new QGraphicsScene();
+	distortionWindow = new QGraphicsView(distortionScene);
+	distortionWindow->move(uiFrame.width(), visWinSize);
 
 	//refresh the UI
 	w.refreshUI();
diff --git a/source_midIR.txt b/source_midIR.txt
new file mode 100644
index 0000000..a7beaaf
--- /dev/null
+++ b/source_midIR.txt
@@ -0,0 +1,767 @@
+   898.665771  0.196227
+   902.522705  0.207933
+   906.379639  0.218853
+   910.236572  0.229278
+   914.093506  0.239895
+   917.950439  0.252144
+   921.807373  0.263879
+   925.664307  0.273570
+   929.521240  0.284858
+   933.378174  0.298487
+   937.235107  0.312094
+   941.092041  0.325800
+   944.948975  0.340324
+   948.805908  0.354003
+   952.662842  0.366424
+   956.519775  0.379229
+   960.376709  0.391242
+   964.233643  0.401185
+   968.090576  0.410705
+   971.947510  0.420869
+   975.804443  0.429901
+   979.661377  0.437795
+   983.518311  0.446571
+   987.375244  0.455127
+   991.232178  0.463834
+   995.089111  0.472215
+   998.946045  0.478527
+  1002.802979  0.486165
+  1006.659912  0.494883
+  1010.516846  0.501833
+  1014.373779  0.507649
+  1018.230713  0.512300
+  1022.087646  0.517685
+  1025.944580  0.523520
+  1029.801514  0.526614
+  1033.658447  0.529842
+  1037.515381  0.535331
+  1041.372314  0.540368
+  1045.229248  0.544854
+  1049.086182  0.549423
+  1052.943115  0.553986
+  1056.800049  0.559133
+  1060.656982  0.564271
+  1064.513916  0.569276
+  1068.370850  0.574210
+  1072.227783  0.578073
+  1076.084717  0.582969
+  1079.941650  0.588808
+  1083.798584  0.592551
+  1087.655518  0.598405
+  1091.512451  0.608196
+  1095.369385  0.616455
+  1099.226318  0.623627
+  1103.083252  0.632403
+  1106.940186  0.640811
+  1110.797119  0.647617
+  1114.654053  0.654493
+  1118.510986  0.661529
+  1122.367920  0.668473
+  1126.224854  0.675395
+  1130.081787  0.681317
+  1133.938721  0.687106
+  1137.795654  0.691284
+  1141.652588  0.693295
+  1145.509521  0.697508
+  1149.366455  0.703402
+  1153.223389  0.709345
+  1157.080322  0.715839
+  1160.937256  0.720988
+  1164.794189  0.726381
+  1168.651123  0.734673
+  1172.508057  0.742796
+  1176.364990  0.749452
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\ No newline at end of file
--
libgit2 0.21.4