segmentation / netmets

  #Specify the version being used as well as the language

  cmake_minimum_required(VERSION 2.8.11)
  
  #Name your project here

  project(netmets)

  
  #set the module directory
  set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}")
  

  #find the STIM library

  find_package(STIM)
  
  #if the STIM library isn't found, download it
  if(NOT STIM_INCLUDE_DIRS)
  	file(REMOVE_RECURSE ${CMAKE_BINARY_DIR}/stimlib)	#remove the stimlib directory if it exists
  	set(STIM_GIT "https://git.stim.ee.uh.edu/codebase/stimlib.git")
  	execute_process(COMMAND git clone --depth 1 ${STIM_GIT} WORKING_DIRECTORY ${CMAKE_BINARY_DIR})
  	set(STIM_INCLUDE_DIRS "${CMAKE_BINARY_DIR}/stimlib" CACHE TYPE PATH)
  endif(NOT STIM_INCLUDE_DIRS)

  
  #find BOOST
  find_package(Boost REQUIRED)
  

  #find cuda
  find_package(CUDA REQUIRED)
  

  #find the GLUT library for visualization
  find_package(OpenGL REQUIRED)

  find_package(GLUT REQUIRED)
  

  #GLEW is required for MS Visual C
  if(MSVC)
  	find_package(GLEW REQUIRED)
  	include_directories(${GLEW_INCLUDE_DIR})
  endif(MSVC)
  
  #find OpenCV
  find_package(OpenCV REQUIRED)
  add_definitions(-DUSING_OPENCV)
  

  #find the pthreads package
  find_package(Threads)
  
  #find the X11 package
  find_package(X11)
  

  #find the Approximate Nearest Neighbor Library

  #find_package(ANN REQUIRED)

  #build the executable in the binary directory on MS Visual Studio

  if ( MSVC )
  	SET( CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG "${OUTPUT_DIRECTORY}")
  	SET( CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE "${OUTPUT_DIRECTORY}")
  endif ( MSVC )
  

  include_directories(

  					${OPENGL_INCLUDE_DIRS}

  					${GLUT_INCLUDE_DIR}

  					${STIM_INCLUDE_DIRS}

            			#${ANN_INCLUDE_DIR}

  					${Boost_INCLUDE_DIR}

  					${OpenCV_INCLUDE_DIRS}

  					)
  
  #Assign source files to the appropriate variables

  #file(GLOB SRC_CPP "*.cu")
  #file(GLOB SRC_H "*.h")

  
  #create an executable file

  cuda_add_executable(netmets main.cu)

  
  #set the link libraries
  target_link_libraries(netmets

  #						${OpenGL_LIBRARIES}
  						${OPENGL_gl_LIBRARY}
  						${OPENGL_glu_LIBRARY}

  						${GLUT_LIBRARIES}

  						${CMAKE_THREAD_LIBS_INIT}

              			#${ANN_LIBRARY}

  						${X11_LIBRARIES}

  						${OpenCV_LIBS}

  		  )

  if(MSVC)
  	target_link_libraries(netmets ${GLEW_LIBRARY})
  endif(MSVC)
  

  #set up copying data files
  configure_file(data/00_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/00_GT.obj @ONLY)
  configure_file(data/00_T.obj ${CMAKE_CURRENT_BINARY_DIR}/00_T.obj @ONLY)
  configure_file(data/01_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/01_GT.obj @ONLY)
  configure_file(data/01_T.obj ${CMAKE_CURRENT_BINARY_DIR}/01_T.obj @ONLY)
  configure_file(data/02_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/02_GT.obj @ONLY)
  configure_file(data/02_T.obj ${CMAKE_CURRENT_BINARY_DIR}/02_T.obj @ONLY)
  configure_file(data/03_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/03_GT.obj @ONLY)
  configure_file(data/03_T.obj ${CMAKE_CURRENT_BINARY_DIR}/03_T.obj @ONLY)
  configure_file(data/04_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/04_GT.obj @ONLY)
  configure_file(data/04_Ta.obj ${CMAKE_CURRENT_BINARY_DIR}/04_Ta.obj @ONLY)
  configure_file(data/04_Tb.obj ${CMAKE_CURRENT_BINARY_DIR}/04_Tb.obj @ONLY)

  configure_file(data/1.swc ${CMAKE_CURRENT_BINARY_DIR}/1.swc @ONLY)
  configure_file(data/2.swc ${CMAKE_CURRENT_BINARY_DIR}/2.swc @ONLY)

  configure_file(data/00_GT.swc ${CMAKE_CURRENT_BINARY_DIR}/00_GT.swc @ONLY)

  configure_file(data/h1_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/h1_GT.obj @ONLY)
  configure_file(data/h2_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/h2_GT.obj @ONLY)
  configure_file(data/h1_T.obj ${CMAKE_CURRENT_BINARY_DIR}/h1_T.obj @ONLY)
  configure_file(data/h2_T.obj ${CMAKE_CURRENT_BINARY_DIR}/h2_T.obj @ONLY)