validation / pointmets

Commit 7aacb90f511280bcb1982d2994c0e701b178869c

Authored by David Mayerich
1 parent f51866f3

updated examples, added the correct repo location

Showing 3 changed files with 233 additions and 229 deletions   Show diff stats
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@@ -16,6 +16,9 @@ find_package(ANN REQUIRED) @@ -16,6 +16,9 @@ find_package(ANN REQUIRED)
16 #find the pthreads package 16 #find the pthreads package
17 find_package(Threads) 17 find_package(Threads)
18 18
  19 +#find the X11 package
  20 +find_package(X11)
  21 +
19 include_directories( 22 include_directories(
20 ${STIM_INCLUDE_DIRS} 23 ${STIM_INCLUDE_DIRS}
21 ${ANN_INCLUDE_DIR} 24 ${ANN_INCLUDE_DIR}
@@ -35,6 +38,7 @@ add_executable(pointmets @@ -35,6 +38,7 @@ add_executable(pointmets
35 target_link_libraries(pointmets 38 target_link_libraries(pointmets
36 ${CMAKE_THREAD_LIBS_INIT} 39 ${CMAKE_THREAD_LIBS_INIT}
37 ${ANN_LIBRARY} 40 ${ANN_LIBRARY}
  41 + ${X11_LIBRARIES}
38 ) 42 )
39 43
40 #copy an OBJ test case 44 #copy an OBJ test case
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209 -1777 785 1 +3 686
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210 1852 381 210 1852 381
211 \ No newline at end of file 211 \ No newline at end of file
@@ -107,14 +107,14 @@ void calc_hitlist(std::vector< unsigned int >& hits, @@ -107,14 +107,14 @@ void calc_hitlist(std::vector< unsigned int >& hits,
107 107
108 int main(int argc, char** argv){ 108 int main(int argc, char** argv){
109 109
110 - //output advertisement  
111 - std::cout<<std::endl<<std::endl;  
112 - std::cout<<"========================================================================="<<std::endl;  
113 - std::cout<<"Thank you for using the PointMets validation tool!"<<std::endl;  
114 - std::cout<<"Scalable Tissue Imaging and Modeling (STIM) Lab, University of Houston"<<std::endl;  
115 - std::cout<<"Developers: David Mayerich"<<std::endl;  
116 - std::cout<<"Source: https://github.com/stimlab/hsiproc.git"<<std::endl;  
117 - std::cout<<"========================================================================="<<std::endl<<std::endl; 110 + //output advertisement
  111 + std::cout<<std::endl<<std::endl;
  112 + std::cout<<"========================================================================="<<std::endl;
  113 + std::cout<<"Thank you for using the PointMets validation tool!"<<std::endl;
  114 + std::cout<<"Scalable Tissue Imaging and Modeling (STIM) Lab, University of Houston"<<std::endl;
  115 + std::cout<<"Developers: David Mayerich"<<std::endl;
  116 + std::cout<<"Source: https://git.stim.ee.uh.edu/validation/pointmets"<<std::endl;
  117 + std::cout<<"========================================================================="<<std::endl<<std::endl;
118 118
119 119
120 stim::arglist args; 120 stim::arglist args;
@@ -131,20 +131,20 @@ int main(int argc, char** argv){ @@ -131,20 +131,20 @@ int main(int argc, char** argv){
131 args.parse(argc, argv); 131 args.parse(argc, argv);
132 132
133 //display the help text if requested 133 //display the help text if requested
134 - if(args["help"].is_set()){  
135 - std::cout<<std::endl<<"usage: pointmets ground_truth test_case --option [A B C ...]"<<std::endl;  
136 - std::cout<<std::endl<<std::endl  
137 - << "examples: pointmets blue_gt.txt blue_t.txt"<<std::endl;  
138 - std::cout << " pointmets blue_gt.bmp blue_t.bmp" << std::endl;  
139 - std::cout<<std::endl<<std::endl;  
140 - std::cout<<args.str()<<std::endl;  
141 - exit(1); 134 + if(args["help"].is_set()){
  135 + std::cout<<std::endl<<"usage: pointmets ground_truth test_case --option [A B C ...]"<<std::endl;
  136 + std::cout<<std::endl<<std::endl
  137 + << "examples: pointmets blue_gt.txt blue_t.txt"<<std::endl;
  138 + std::cout << " pointmets blue_gt.bmp blue_t.bmp" << std::endl;
  139 + std::cout<<std::endl<<std::endl;
  140 + std::cout<<args.str()<<std::endl;
  141 + exit(1);
142 } 142 }
143 143
144 - //if the input and output files aren't specified, throw an error and exit  
145 - if(args.nargs() < 2){  
146 - std::cout<<"ERROR: Two files must be specified for comparison, enter pointmets --help for options."<<std::endl<<std::endl;  
147 - exit(1); 144 + //if the input and output files aren't specified, throw an error and exit
  145 + if(args.nargs() < 2){
  146 + std::cout<<"ERROR: Two files must be specified for comparison, enter pointmets --help for options."<<std::endl<<std::endl;
  147 + exit(1);
148 } 148 }
149 149
150 //get the ground truth and test file 150 //get the ground truth and test file