envi.h
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#ifndef STIM_ENVI_H
#define STIM_ENVI_H
#include "../envi/envi_header.h"
#include "../envi/bsq.h"
#include "../envi/bip.h"
#include "../envi/bil.h"
namespace rts{
//container class for an ENVI binary file reader
class envi{
void* file; //void pointer to the relevant file reader (bip, bsq, or bil - with appropriate data type)
public:
envi_header header;
bool allocate(){
file = NULL; //set file to a NULL pointer
if(header.interleave == envi_header::BSQ){
if(header.data_type ==envi_header::float32)
return(file = new bsq<float>());
else if(header.data_type == envi_header::float64)
return(file = new bsq<double>());
}
else if(header.interleave == envi_header::BIP){
if(header.data_type ==envi_header::float32)
return(file = new bip<float>());
else if(header.data_type == envi_header::float64)
return(file = new bip<double>());
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32)
return(file = new bil<float>());
else if(header.data_type == envi_header::float64)
return(file = new bil<double>());
}
exit(1); //if the function hasn't already returned, we don't handle this state
}
bool open(std::string filename, std::string headername){
//allocate memory
allocate();
//load the header
header.load(headername);
//load the file
if(header.interleave == envi_header::BSQ) { //if the infile is bsq file
if(header.data_type == envi_header::float32) {
return ((bsq<float>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else if(header.data_type == envi_header::float64) {
return ((bsq<double>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else
return false;
}
else if(header.interleave == envi_header::BIL) { //if the infile is bil file
if(header.data_type == envi_header::float32) {
return ((bil<float>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else if(header.data_type == envi_header::float64) {
return ((bil<double>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else
return false;
}
else if(header.interleave == envi_header::BIP) { //if the infile is bip file
if(header.data_type == envi_header::float32) {
return ((bip<float>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else if(header.data_type == envi_header::float64) {
return ((bip<double>*)file)->open(filename, header.samples, header.lines, header.bands, header.header_offset, header.wavelength);
}
else
return false;
}
else{
std::cout<<"ERROR: unidentified type file "<<headername<<std::cout;
exit(1);
}
}
//perform normalization
bool normalize(std::string outfile, double band){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->normalize(outfile, band);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->normalize(outfile,band);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->normalize(outfile, band);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->normalize(outfile,band);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->normalize(outfile, band);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->normalize(outfile,band);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
//perform baseline correction
bool baseline(std::string outfile, std::vector<double> w){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->baseline(outfile, w);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->baseline(outfile,w);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->baseline(outfile, w);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->baseline(outfile, w);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->baseline(outfile, w);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->baseline(outfile, w);
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
}
//perform conversion
bool convert(std::string outfile, rts::envi_header::interleaveType interleave){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32){ //if the data type of infile is float
if(interleave == envi_header::BSQ){
std::cout<<"ERROR: is already BSQ file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL) //if the target file is bil file
return ((bsq<float>*)file)->bil(outfile);
else if(interleave == envi_header::BIP) //if the target file is bip file
return ((bsq<float>*)file)->bip(outfile);
}
else if(header.data_type == envi_header::float64){ //if the data type is float
if(interleave == envi_header::BSQ){
std::cout<<"ERROR: is already BSQ file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL)
return ((bsq<double>*)file)->bil(outfile);
else if(interleave == envi_header::BIP)
return ((bsq<double>*)file)->bip(outfile);
}
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32){ //if the data type of infile is float
if(interleave == envi_header::BIL){
std::cout<<"ERROR: is already BIL file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BSQ) //if the target file is bsq file
return ((bil<float>*)file)->bsq(outfile);
else if(interleave == envi_header::BIP) //if the target file is bip file
return ((bil<float>*)file)->bip(outfile);
}
else if(header.data_type == envi_header::float64){ //if the data type is float
if(interleave == envi_header::BIL){
std::cout<<"ERROR: is already BIL file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BSQ)
return ((bil<double>*)file)->bsq(outfile);
else if(interleave == envi_header::BIP)
return ((bil<double>*)file)->bip(outfile);
}
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIP){
if(header.data_type ==envi_header::float32){ //if the data type of infile is float
if(interleave == envi_header::BIP){
std::cout<<"ERROR: is already BIP file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL) //if the target file is bil file
return ((bip<float>*)file)->bil(outfile);
else if(interleave == envi_header::BSQ) //if the target file is bsq file
return ((bip<float>*)file)->bsq(outfile);
}
else if(header.data_type == envi_header::float64){ //if the data type is float
if(interleave == envi_header::BIP){
std::cout<<"ERROR: is already BIP file"<<std::endl;
exit(1);
}
else if(interleave == envi_header::BIL) //if the target file is bil file
return ((bip<double>*)file)->bil(outfile);
else if(interleave == envi_header::BSQ) //if the target file is bsq file
return ((bip<double>*)file)->bsq(outfile);
}
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else{
std::cout<<"ERROR: unidentified interleave type"<<std::endl;
exit(1);
}
return false;
}
//get the mask
bool mask(unsigned char* p, double mask_band, double threshold) {
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->mask(p, mask_band, threshold);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->mask(p, mask_band, threshold);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->mask(p, mask_band, threshold);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->mask(p, mask_band, threshold);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->mask(p, mask_band, threshold);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->mask(p, mask_band, threshold);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
//peak height to peak height ratio
bool ph_to_ph(double lb1, double rb1, double pos1, double lb2, double rb2, double pos2, void * result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->ph_to_ph(lb1, rb1, pos1, lb2, rb2, pos2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
//peak area to peak height ratio
bool pa_to_ph(double lb1, double rb1, double lab1, double rab1, double lb2, double rb2, double pos, void * result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->pa_to_ph(lb1, rb1, lab1, rab1, lb2, rb2, pos, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
//peak area to peak area ratio
bool pa_to_pa(double lb1, double rb1, double lab1, double rab1,
double lb2, double rb2, double lab2, double rab2, void* result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->pa_to_pa(lb1, rb1, lab1, rab1, lb2, rb2, lab2, rab2, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
//center of gravity
bool cpoint(double lb1, double rb1, double lab1, double rab1, void* result){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->cpoint(lb1, rb1, lab1, rab1, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->cpoint(lb1, rb1, lab1, rab1, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIL){ //if the infile is bil file
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->cpoint(lb1, rb1, lab1, rab1, (float*)result);
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->cpoint(lb1, rb1, lab1, rab1, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else if(header.interleave == envi_header::BIP){ //if the infile is bip file
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->cpoint(lb1, rb1, lab1, rab1,(float*)result);
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->cpoint(lb1, rb1, lab1, rab1, (double*)result);
else
std::cout<<"ERROR: unidentified data type"<<std::endl;
}
else{
std::cout<<"ERROR: unidentified file type"<<std::endl;
exit(1);
}
return false;
}
bool close(){
if(header.interleave == envi_header::BSQ){
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->close();
else if(header.data_type == envi_header::float64)
return ((bsq<double>*)file)->close();
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIL){
if(header.data_type ==envi_header::float32)
return ((bil<float>*)file)->close();
else if(header.data_type == envi_header::float64)
return ((bil<double>*)file)->close();
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
else if(header.interleave == envi_header::BIP){
if(header.data_type ==envi_header::float32)
return ((bip<float>*)file)->close();
else if(header.data_type == envi_header::float64)
return ((bip<double>*)file)->close();
else{
std::cout<<"ERROR: unidentified data type"<<std::endl;
exit(1);
}
}
return false;
}
bool save_header(std::string filename){
//save the header file here
header.save(filename);
return true;
}
bool band(void* ptr, double wavelength){
if(header.interleave == envi_header::BSQ){ //if the infile is bsq file
if(header.data_type ==envi_header::float32)
return ((bsq<float>*)file)->band((float*)ptr, wavelength);
}
return false;
}
};
} //end namespace rts
#endif