changed rts namespace to stim

David Mayerich
1 parent bba4f4d9
Showing 32 changed files with 61 additions and 62 deletions Show diff stats
cuda/devices.h
envi/bil.h
envi/binary.h
envi/bip.h
envi/bsq.h
envi/envi.h
envi/envi_header.h
gl/texture.h
math/bessel.h
math/complex.h
math/complexfield.cuh
math/constants.h
math/field.cuh
math/function.h
math/legendre.h
math/matrix.h
math/plane.h
math/quad.h
math/quaternion.h
math/realfield.cuh
@@ -3,7 +3,7 @@
 #include <cuda.h>
-namespace rts{
+namespace stim{
 int maxThreadsPerBlock()
 {
@@ -15,4 +15,4 @@ int maxThreadsPerBlock()
 }
 }	//end namespace rts
-#endif
 \ No newline at end of file
+#endif
@@ -6,7 +6,7 @@
 #include <cstring>
 #include <utility>
-namespace rts{
+namespace stim{
 template <typename T>
@@ -8,7 +8,7 @@
 #include <fstream>
 #include <sys/stat.h>
-namespace rts{
+namespace stim{
 //This class contains a bunch of functions useful for multidimensional binary file access
 template< typename T, unsigned int D = 3 >
@@ -7,7 +7,7 @@
 #include <cstring>
 #include <utility>
-namespace rts{
+namespace stim{
 template <typename T>
@@ -438,7 +438,7 @@ public:
 		//first creat a temporary bil file and convert bip file to bil file
 		bil(temp);
-		rts::bil<T> n;
+		stim::bil<T> n;
 		if(n.open(temp, R[0], R[1], R[2], offset, w)==false){        //open infile
 			std::cout<<"ERROR: unable to open input file"<<std::endl;
 			exit(1);
@@ -8,7 +8,7 @@
 #include <utility>
 #include <vector>
-namespace rts{
+namespace stim{
 template <typename T>
@@ -274,7 +274,7 @@ public:
 		//first creat a temporary bil file and convert bsq file to bil file
 		bil(temp);
-		rts::bil<T> n;
+		stim::bil<T> n;
 		if(n.open(temp, R[0], R[1], R[2], offset, w)==false){        //open infile
 			std::cout<<"ERROR: unable to open input file"<<std::endl;
 			exit(1);
@@ -6,7 +6,7 @@
 #include "../envi/bip.h"
 #include "../envi/bil.h"
-namespace rts{
+namespace stim{
 //container class for an ENVI binary file reader
 class envi{	
@@ -173,7 +173,7 @@ public:
 	}
 	//perform conversion
-	bool convert(std::string outfile, rts::envi_header::interleaveType interleave){
+	bool convert(std::string outfile, stim::envi_header::interleaveType interleave){
 		if(header.interleave == envi_header::BSQ){			//if the infile is bsq file
@@ -11,7 +11,7 @@
 //information from an ENVI header file
 //A good resource can be found here: http://www.exelisvis.com/docs/enviheaderfiles.html
-namespace rts{
+namespace stim{
 struct envi_header
 {
@@ -6,7 +6,7 @@
 #include "rts/gl/error.h"
 #include <stdlib.h>
-namespace rts{
+namespace stim{
 ///This class stores an OpenGL texture map and is used by rts_glShaderProgram.
 class glTexture
@@ -8,7 +8,7 @@
 #define el 0.5772156649015329
-namespace rts{
+namespace stim{
 static complex<double> cii(0.0,1.0);
 static complex<double> cone(1.0,0.0);
@@ -1512,4 +1512,4 @@ int cbessjyva_sph(int v,complex&lt;P&gt; z,P &amp;vm,complex&lt;P&gt;*cjv,
 }	//end namespace rts
-#endif
 \ No newline at end of file
+#endif
@@ -11,7 +11,7 @@ and can therefore be used in CUDA code and on CUDA devices.
 #include <sstream>
 #include <iostream>
-namespace rts
+namespace stim
 {
 template <class T>
@@ -8,7 +8,7 @@
 #include "../math/complex.h"
 #include "../math/realfield.cuh"
-namespace rts{
+namespace stim{
 template<typename T>
 __global__ void gpu_complexfield_mag(T* dest, complex<T>* source, unsigned int r0, unsigned int r1){
 #ifndef RTS_CONSTANTS_H
 #define RTS_CONSTANTS_H
-#define rtsPI 	3.14159
-#define rtsTAU	2 * rtsPI
+#define stimPI 	3.14159
+#define stimTAU	2 * rtsPI
-#endif
 \ No newline at end of file
+#endif
@@ -15,7 +15,7 @@
 #include "../visualization/colormap.h"
-namespace rts{
+namespace stim{
 //multiply R = X * Y
 template<typename T>
@@ -3,7 +3,7 @@
 #include <string>
-namespace rts{
+namespace stim{
 //template class for a one-dimensional function
 template <class Tx, class Ty>
@@ -3,7 +3,7 @@
 #include "rts/cuda/callable.h"
-namespace rts{
+namespace stim{
 template <typename T>
 CUDA_CALLABLE void init_legendre(T x, T& P0, T& P1)
@@ -7,8 +7,7 @@
 #include "vector.h"
 #include "../cuda/callable.h"
-namespace rts
-{
+namespace stim{
 template <class T, int N>
 struct matrix
@@ -6,14 +6,14 @@
 #include "rts/cuda/callable.h"
-namespace rts{
+namespace stim{
 template <typename T, int D> class plane;
 }
 template <typename T, int D>
-CUDA_CALLABLE rts::plane<T, D> operator-(rts::plane<T, D> v);
+CUDA_CALLABLE stim::plane<T, D> operator-(stim::plane<T, D> v);
-namespace rts{
+namespace stim{
 template <class T, int D = 3>
 class plane{
@@ -176,4 +176,4 @@ public:
-#endif
 \ No newline at end of file
+#endif
@@ -10,7 +10,7 @@
 #include <iomanip>
 #include <algorithm>
-namespace rts{
+namespace stim{
 //template for a quadangle class in ND space
 template <class T, int N = 3>
@@ -4,7 +4,7 @@
 #include "../math/matrix.h"
 #include "../cuda/callable.h"
-namespace rts{
+namespace stim{
 template<typename T>
 class quaternion
@@ -33,7 +33,7 @@ __global__ void gpu_gaussian(T* dest, unsigned int r0, unsigned int r1, T mean, 
 	dest[i] = fx * fy * fz;
 }*/
-namespace rts{
+namespace stim{
 //multiply R = X * Y
 template<typename T>
@@ -293,4 +293,4 @@ public:
 }	//end namespace rts
-#endif
 \ No newline at end of file
+#endif
@@ -10,7 +10,7 @@
 #include <iomanip>
 #include <algorithm>
-namespace rts{
+namespace stim{
 //template for a rectangle class in ND space
 template <class T, int N = 3>
@@ -6,7 +6,7 @@
 #include "../math/vector.h"
 #include <iostream>
-namespace rts{
+namespace stim{
 template <class T, int N=3>
 struct triangle
@@ -8,7 +8,7 @@
 #include "../cuda/callable.h"
-namespace rts
+namespace stim
 {
@@ -257,7 +257,7 @@ struct vec
 }	//end namespace rts
 template <typename T, int N>
-std::ostream& operator<<(std::ostream& os, rts::vec<T, N> v)
+std::ostream& operator<<(std::ostream& os, stim::vec<T, N> v)
 {
     os<<v.str();
     return os;
@@ -266,9 +266,9 @@ std::ostream&amp; operator&lt;&lt;(std::ostream&amp; os, rts::vec&lt;T, N&gt; v)
 template <typename T, int N>
-CUDA_CALLABLE rts::vec<T, N> operator*(T lhs, rts::vec<T, N> rhs)
+CUDA_CALLABLE stim::vec<T, N> operator*(T lhs, stim::vec<T, N> rhs)
 {
-    rts::vec<T, N> r;
+	stim::vec<T, N> r;
     return rhs * lhs;
 }
@@ -6,7 +6,7 @@
 #include "../optics/planewave.h"
 #include <vector>
-namespace rts{
+namespace stim{
 template<typename P>
 class beam : public planewave<P>
@@ -200,4 +200,4 @@ public:
 }
-#endif
 \ No newline at end of file
+#endif
@@ -10,7 +10,7 @@
 #include "../math/rect.h"
-namespace rts{
+namespace stim{
 template<typename T>
 __global__ void gpu_planewave2efield(complex<T>* X, complex<T>* Y, complex<T>* Z, unsigned int r0, unsigned int r1, 
@@ -406,4 +406,4 @@ public:
 }   //end namespace rts
-#endif
 \ No newline at end of file
+#endif
@@ -8,7 +8,7 @@
 #include "../cuda/devices.h"
 #include "../optics/efield.cuh"
-namespace rts{
+namespace stim{
 /*  This class implements a discrete representation of an electromagnetic field
     in 2D scattered by a sphere. This class implements Mie scattering.
@@ -17,7 +17,7 @@ template&lt;typename P&gt;
 class esphere : public efield<P>
 {
 private:
-	rts::complex<P> n;		//sphere refractive index
+	stim::complex<P> n;		//sphere refractive index
 	P a;					//sphere radius
 	//parameters dependent on wavelength
@@ -159,4 +159,4 @@ public:
 }	//end namespace rts
-#endif
 \ No newline at end of file
+#endif
@@ -4,7 +4,7 @@
 #include "../math/plane.h"
-namespace rts{
+namespace stim{
 //GPU kernel to compute the electric field
 template<typename T>
@@ -336,4 +336,4 @@ public:
 }
-#endif
 \ No newline at end of file
+#endif
@@ -12,7 +12,7 @@
 #include "../math/constants.h"
 #include "../math/function.h"
-namespace rts{
+namespace stim{
 //Material class - default representation for the material property is the refractive index (RI)
 template<typename T>
@@ -8,7 +8,7 @@
 #include <vector>
 #include <sstream>
-namespace rts{
+namespace stim{
 //this function writes a sinc function to "dest" such that an iFFT produces a slab
 template<typename T>
@@ -8,13 +8,13 @@
 #include "../math/quaternion.h"
 #include "../math/constants.h"
 #include "../math/plane.h"
-#include "rts/cuda/callable.h"
+#include "../cuda/callable.h"
 /*Basic conversions used here (assuming a vacuum)
 	lambda =
 */
-namespace rts{
+namespace stim{
 template<typename T>
 class planewave{
@@ -315,4 +315,4 @@ std::ostream&amp; operator&lt;&lt;(std::ostream&amp; os, rts::planewave&lt;T&gt; p)
     return os;
 }
-#endif
 \ No newline at end of file
+#endif
-#include <rts/math/vector.h>
-#include <rts/math/point.h>
-#include <rts/math/quaternion.h>
-#include <rts/math/matrix.h>
+#include <../math/vector.h>
+#include <../math/point.h>
+#include <../math/quaternion.h>
+#include <../math/matrix.h>
 #include <ostream>
-#ifndef RTS_CAMERA_H
-#define RTS_CAMERA_H
+#ifndef STIM_CAMERA_H
+#define STIM_CAMERA_H
-namespace rts{
+namespace stim{
 class camera
 {
-#ifndef RTS_COLORMAP_H
-#define RTS_COLORMAP_H
+#ifndef STIM_COLORMAP_H
+#define STIM_COLORMAP_H
 #include <string>
 #include <stdlib.h>
@@ -30,7 +30,7 @@ texture&lt;float4, cudaTextureType1D&gt; cudaTexBrewer;
 static cudaArray* gpuBrewer;
 #endif
-namespace rts{
+namespace stim{
 enum colormapType {cmBrewer, cmGrayscale, cmRainbow};