deprecated / bimsim

  #include "sphere.h"

  #include "rts/optics/material.h"

  #include <vector>
  //#include "rts/complex.h"
  
  #include "nearfield.h"
  //nearfieldStruct* NF;
  
  #include "microscope.h"
  microscopeStruct* SCOPE;
  
  #include "fieldslice.h"
  
  #include "fileout.h"
  #include "options.h"
  #include "montecarlo.h"

  #include "rts/math/point.h"
  #include "rts/math/spherical_bessel.h"
  #include "rts/math/matrix.h"
  #include "rts/math/quaternion.h"

  #include "rts/envi/envi.h"

  
  #include "warnings.h"
  

  #include "planewave.h"
  
  //user interface
  #include "qtMainDialog.h"
  bool gui = false;
  

  fileoutStruct gFileOut;

  bool verbose = false;

  using namespace std;
  
  int cbessjyva(double v,complex<double> z,double &vm,complex<double>*cjv,

      complex<double>*cyv,complex<double>*cjvp,complex<double>*cyvp);
  
  int main(int argc, char *argv[])
  {

      //benchtest planewave class
      rts::vector<ptype, 3> k(1, 0, 0);
      rts::vector<ptype, 3> E(2, 2, 0);
      planewave<ptype> P(k, E);
  
      std::cout<<P<<std::endl;
  
      exit(1);
  

  	SCOPE = new microscopeStruct();
  

      LoadParameters(argc, argv);
  

  	//initialize GPU memory for fields
  	SCOPE->init();
  

      if(gui)
      {
          QApplication app(argc, argv);
          qtMainDialog bsDialog;
  
          //populate the user interface with the default and command-line values
          bsDialog.populateUi();
          bsDialog.show();
          return app.exec();
      }
      else
      {
  
          gFileOut.Save(SCOPE);

          if(verbose)
              OutputOptions();

          SCOPE->destroy();
      }

  
  }