optics / imie

Commit 887d4441b35cd4010811f94d2337e2dcdf3a7b0f

Authored by David Mayerich
1 parent 8ffb8373

updates from STIM move

Showing 20 changed files with 6855 additions and 1727 deletions   Show diff stats
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CMakeLists.txt
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1 1 #Specify the version being used aswell as the language
2   -cmake_minimum_required(VERSION 2.8)
  2 +cmake_minimum_required(VERSION 2.8.9)
3 3 #Name your project here
4   -project(IMie)
  4 +project(imie)
  5 +
  6 +#set (CMAKE_PREFIX_PATH "${QTDIR}; ${WINSDK_LIB}")
5 7  
6 8 #set the module directory
7 9 set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}")
8   -
9   -#find the Qt4
10   -find_package(Qt4 REQUIRED)
11   -find_package(Qt4 REQUIRED)
  10 +set(CMAKE_AUTMOC ON)
  11 +#find the Qt5
  12 +find_package(Qt5Widgets REQUIRED)
  13 +find_package(Qt5Core REQUIRED)
  14 +find_package(Qt5Gui REQUIRED)
  15 +find_package(Qt5OpenGL REQUIRED)
12 16 include_directories(${QT_INCLUDE_DIRECTORY})
13   -include(${QT_USE_FILE})
14 17  
15 18 #set up CUDA
16 19 find_package(CUDA)
... ... @@ -19,17 +22,14 @@ find_package(CUDA)
19 22 find_package(OpenGL REQUIRED)
20 23  
21 24 #find GLUT
22   -set(GLUT_ROOT_PATH $ENV{GLUT_ROOT_PATH})
23   -find_package(GLUT REQUIRED)
  25 +#set(GLUT_ROOT_PATH $ENV{GLUT_ROOT_PATH})
  26 +#find_package(GLUT REQUIRED)
24 27  
25 28 #find GLEW
26 29 find_package(GLEW REQUIRED)
27 30  
28   -#find Qwt
29   -find_package(Qwt REQUIRED)
30   -
31 31 #add Qt OpenGL stuff
32   -set(QT_USE_QTOPENGL TRUE)
  32 +#set(QT_USE_QTOPENGL TRUE)
33 33  
34 34 #ask the user for the RTS location
35 35 set(RTS_ROOT_PATH $ENV{RTS_ROOT_PATH})
... ... @@ -38,14 +38,22 @@ find_package(RTS REQUIRED)
38 38 #set the include directories
39 39 include_directories(
40 40 ${CMAKE_CURRENT_BINARY_DIR}
41   - ${QT_INCLUDES}
42   - ${QT_QTOPENGL_INCLUDE_DIR}
  41 + ${Qt5Widgets_INCLUDES}
  42 + ${Qt5Core_INCLUDES}
  43 + ${Qt5Gui_INCLUDES}
  44 + ${Qt5OpenGL_INCLUDES}
  45 +# ${QT_QTOPENGL_INCLUDE_DIR}
43 46 ${OPENGL_INCLUDE_DIR}
44 47 ${GLEW_INCLUDE_PATH}
45   - ${GLUT_INCLUDE_DIR}
  48 +# ${GLUT_INCLUDE_DIR}
46 49 ${RTS_INCLUDE_DIR}
47 50 )
48 51  
  52 +#enable warnings
  53 +if(CMAKE_COMPILER_IS_GNUCC OR CMAKE_COMPILER_IS_GNUCXX)
  54 + add_definitions(-Wall)
  55 +endif()
  56 +
49 57 #Assign source files to the appropriate variables
50 58 file(GLOB SRC_CPP "*.cpp")
51 59 file(GLOB SRC_H "*.h")
... ... @@ -54,26 +62,36 @@ file(GLOB SRC_QRC "*.qrc")
54 62 file(GLOB SRC_CU "*.cu")
55 63  
56 64 #set up copying data files
57   -configure_file(kPMMA.txt ${CMAKE_CURRENT_BINARY_DIR}/kPMMA.txt @ONLY)
58   -configure_file(eta_polystyreneK.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_polystyreneK.txt @ONLY)
59   -configure_file(etaToluene.txt ${CMAKE_CURRENT_BINARY_DIR}/etaToluene.txt @ONLY)
  65 +configure_file(etaPolystyrene.txt ${CMAKE_CURRENT_BINARY_DIR}/etaPolystyrene.txt @ONLY)
  66 +configure_file(etaPMMA.txt ${CMAKE_CURRENT_BINARY_DIR}/etaPMMA.txt @ONLY)
60 67 configure_file(source_midIR.txt ${CMAKE_CURRENT_BINARY_DIR}/source_midIR.txt @ONLY)
61   -configure_file(kPolyethylene.txt ${CMAKE_CURRENT_BINARY_DIR}/kPolyethylene.txt @ONLY)
62   -configure_file(kPTFE.txt ${CMAKE_CURRENT_BINARY_DIR}/kPTFE.txt @ONLY)
63 68  
64 69 #determine which source files have to be moc'd
65   -Qt4_wrap_cpp(UI_MOC ${SRC_H})
66   -Qt4_wrap_ui(UI_H ${SRC_UI})
67   -Qt4_add_resources(ALL_RCC ${ALL_QRC})
  70 +Qt5_wrap_cpp(UI_MOC ${SRC_H})
  71 +Qt5_wrap_ui(UI_H ${SRC_UI})
  72 +Qt5_add_resources(ALL_RCC ${ALL_QRC})
68 73  
69 74 #moc the necessary files
70   -Qt4_automoc(${ALL_CPP})
  75 +#Qt5_automoc(${ALL_CPP})
71 76  
72 77 source_group(QtMoc FILES ${UI_MOC})
73 78 source_group(QtUI FILES ${SRC_UI})
74 79  
75 80 #create an executable
76   -cuda_add_executable(IMie ${SRC_CPP} ${SRC_H} ${UI_H} ${UI_MOC} ${ALL_RCC} ${SRC_CU})
  81 +cuda_add_executable(imie ${SRC_CPP} ${SRC_H} ${UI_H} ${UI_MOC} ${ALL_RCC} ${SRC_CU})
  82 +
  83 +#specify which qt5 modules to use
  84 +qt5_use_modules(imie Core Widgets OpenGL Gui)
77 85  
78 86 #set the link libraries
79   -target_link_libraries(IMie ${QT_LIBRARIES} ${QT_QTOPENGL_LIBRARY} ${OPENGL_gl_LIBRARY} ${OPENGL_glu_LIBRARY} ${GLEW_LIBRARY} ${QWT_LIBRARY})
80 87 \ No newline at end of file
  88 +target_link_libraries(imie
  89 + ${Qt5Widgets_LIBRARIES}
  90 + ${Qt5Core_LIBRARIES}
  91 + ${Qt5Gui_LIBRARIES}
  92 + ${Qt5OpenGL_LIBRARIES}
  93 + #${QT_QTOPENGL_LIBRARY}
  94 + ${OPENGL_gl_LIBRARY}
  95 + ${OPENGL_glu_LIBRARY}
  96 + ${GLEW_LIBRARY}
  97 + #${QWT_LIBRARY}
  98 + )
... ...
EstimateMaterial.cpp
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... ... @@ -22,11 +22,9 @@ void EstimateK(double* E)
22 22 {
23 23 int nVals = RefSpectrum[currentSpec].size();
24 24 double nuStart = RefSpectrum[currentSpec].front().nu;
25   - double nuEnd = RefSpectrum[currentSpec].back().nu;
26 25  
27 26 double r = radius/10000.0;
28 27 double nu;
29   - double dNu = (nuEnd - nuStart)/(nVals-1);
30 28 double eScale;
31 29 for(int i=0; i<nVals; i++)
32 30 {
... ...
FindGLEW.cmake
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... ... @@ -10,15 +10,14 @@
10 10 IF (WIN32)
11 11 FIND_PATH( GLEW_INCLUDE_PATH GL/glew.h
12 12 $ENV{PROGRAMFILES}/GLEW/include
13   - ${PROJECT_SOURCE_DIR}/src/nvgl/glew/include
14   - DOC "The directory where GL/glew.h resides")
  13 + $ENV{GLEW_PATH}/include
  14 + )
15 15 FIND_LIBRARY( GLEW_LIBRARY
16 16 NAMES glew GLEW glew32 glew32s
17 17 PATHS
18 18 $ENV{PROGRAMFILES}/GLEW/lib
19   - ${PROJECT_SOURCE_DIR}/src/nvgl/glew/bin
20   - ${PROJECT_SOURCE_DIR}/src/nvgl/glew/lib
21   - DOC "The GLEW library")
  19 + $ENV{GLEW_PATH}/lib/Release/Win32
  20 + )
22 21 ELSE (WIN32)
23 22 FIND_PATH( GLEW_INCLUDE_PATH GL/glew.h
24 23 /usr/include
... ... @@ -42,10 +41,4 @@ IF (GLEW_INCLUDE_PATH)
42 41 SET( GLEW_FOUND 1 CACHE STRING "Set to 1 if GLEW is found, 0 otherwise")
43 42 ELSE (GLEW_INCLUDE_PATH)
44 43 SET( GLEW_FOUND 0 CACHE STRING "Set to 1 if GLEW is found, 0 otherwise")
45   -ENDIF (GLEW_INCLUDE_PATH)
46   -
47   -MARK_AS_ADVANCED(
48   - GLEW_FOUND
49   - GLEW_INCLUDE_PATH
50   - GLEW_LIBRARY
51   -)
52 44 \ No newline at end of file
  45 +ENDIF (GLEW_INCLUDE_PATH)
53 46 \ No newline at end of file
... ...
FindQwt.cmake 0 → 100644
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  1 +#
  2 +# this module look for qwt (http://hdf.ncsa.uiuc.edu) support
  3 +# it will define the following values
  4 +#
  5 +# QWT_INCLUDE_DIR = where qwt.h can be found
  6 +# QWT_LIBRARY = the library to link against qwt
  7 +# FOUND_QWT = set to true after finding the library
  8 +#
  9 +
  10 +INCLUDE(${CMAKE_ROOT}/Modules/FindOpenGL.cmake)
  11 +INCLUDE(${CMAKE_ROOT}/Modules/FindQt.cmake)
  12 +
  13 +IF(EXISTS ${PROJECT_CMAKE}/QwtConfig.cmake)
  14 + INCLUDE(${PROJECT_CMAKE}/QwtConfig.cmake)
  15 +ENDIF(EXISTS ${PROJECT_CMAKE}/QwtConfig.cmake)
  16 +
  17 +IF(Qwt_INCLUDE_DIRS)
  18 +
  19 + FIND_PATH(QWT_INCLUDE_DIR qwt.h ${Qwt_INCLUDE_DIRS})
  20 + FIND_LIBRARY(QWT_LIBRARY qwt ${Qwt_LIBRARY_DIRS})
  21 +
  22 +ELSE(Qwt_INCLUDE_DIRS)
  23 +
  24 + FIND_PATH(QWT_INCLUDE_DIR qwt.h
  25 + /usr/include/qwt
  26 + /usr/local/include/qwt
  27 + /sw/include/qwt
  28 + )
  29 + FIND_LIBRARY(QWT_LIBRARY qwt
  30 + /usr/lib
  31 + /usr/local/lib
  32 + /sw/lib
  33 + )
  34 +
  35 +ENDIF(Qwt_INCLUDE_DIRS)
  36 +
  37 +IF(QWT_INCLUDE_DIR AND QWT_LIBRARY)
  38 + SET(FOUND_QWT 1 CACHE BOOL "Found qwt library")
  39 +ELSE(QWT_INCLUDE_DIR AND QWT_LIBRARY)
  40 + SET(FOUND_QWT 0 CACHE BOOL "Not found qwt library")
  41 +ENDIF(QWT_INCLUDE_DIR AND QWT_LIBRARY)
  42 +
  43 +MARK_AS_ADVANCED(
  44 + QWT_INCLUDE_DIR
  45 + QWT_LIBRARY
  46 + FOUND_QWT
  47 + )
0 48 \ No newline at end of file
... ...
FindRTS.cmake
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1 1 # Tries to find the RTS include directory
2 2  
3   - FIND_PATH( RTS_INCLUDE_DIR NAMES rts_glShaderProgram.h
4   - PATHS
5   - ${CMAKE_CURRENT_SOURCE_DIR}/rts
6   - ${RTS_ROOT_PATH}
7   -)
  3 +find_path( RTS_INCLUDE_DIR rts_glShaderProgram.h HINTS $ENV{RTS_PATH})
8 4  
9   -IF (RTS_FOUND)
10   - #The following deprecated settings are for backwards compatibility with CMake1.4
11   - SET (RTS_INCLUDE_PATH ${RTS_INCLUDE_DIR})
12   -ENDIF(RTS_FOUND)
  5 +SET (RTS_INCLUDE_DIRS ${RTS_INCLUDE_DIR})
13 6  
14   -FIND_PACKAGE_HANDLE_STANDARD_ARGS(RTS REQUIRED_VARS TRUE RTS_INCLUDE_DIR)
  7 +FIND_PACKAGE_HANDLE_STANDARD_ARGS(RTS REQUIRED_VARS TRUE RTS_INCLUDE_DIR)
15 8 \ No newline at end of file
... ...
SimulateSpectrum.cpp
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... ... @@ -265,14 +265,13 @@ complex&lt;double&gt; integrateUs(double r, double lambda, complex&lt;double&gt; eta,
265 265 void pointSpectrum()
266 266 {
267 267 PD.StartTimer(SIMULATE_SPECTRUM);
268   -
  268 +
269 269 //if there is no material to simulate
270 270 if(EtaK.size() == 0)
271 271 return;
272 272 //clear the previous spectrum
273 273 SimSpectrum.clear();
274 274  
275   - double dNu = 2.0f;
276 275 double lambda;
277 276  
278 277 //compute the angles based on NA
... ... @@ -450,7 +449,7 @@ void gpuDetectorSpectrum(int numSamples)
450 449 int nLambda = EtaK.size();
451 450 if(nLambda == 0)
452 451 return;
453   -
  452 +
454 453 //integrate across the objective aperature and calculate the resulting intensity on a detector
455 454 PD.StartTimer(SIMULATE_SPECTRUM);
456 455 //clear the previous spectrum
... ... @@ -458,15 +457,15 @@ void gpuDetectorSpectrum(int numSamples)
458 457  
459 458 //compute Nl (maximum order of the spectrum)
460 459 int Nl = computeNl();
461   -
  460 +
462 461  
463 462 double* alpha = (double*)malloc(sizeof(double)*(Nl + 1));
464 463 double cAngleI, cAngleO, oAngleI, oAngleO, I0;
465 464 computeOpticalParameters(cAngleI, cAngleO, oAngleI, oAngleO, I0, alpha, Nl);
466   -
467 465  
468   -
469   -
  466 +
  467 +
  468 +
470 469  
471 470 //allocate space for the 2D array (Nl x nu) of scattering coefficients
472 471 complex<double>* B = (complex<double>*)malloc(sizeof(complex<double>) * Nl * nLambda);
... ... @@ -494,7 +493,7 @@ void SimulateSpectrum()
494 493 pointSpectrum();
495 494 else
496 495 gpuDetectorSpectrum(objectiveSamples);
497   -
  496 +
498 497 }
499 498  
500 499 double absorbanceDistortion() {
... ... @@ -539,18 +538,20 @@ double intensityDistortion() {
539 538 return error;
540 539 }
541 540  
542   -void DistortionMap(float* distortionMap, int nSteps) {
543   - ofstream outFile("distortion.txt");
  541 +void DistortionMap(float* distortionMap, double minIn, double maxIn, double minOut, double maxOut, int nSteps, std::string filename)
  542 +{
  543 + ofstream outFile(filename.c_str());
544 544  
545 545 //set the parameters for the distortion simulation
546   - double range = 0.4;
547   - double step = (range)/(nSteps-1);
  546 + double range = 0.7;
  547 + double step_in = (maxIn - minIn)/(nSteps-1);
  548 + double step_out = (maxOut - minOut)/(nSteps-1);
548 549  
549   - oNAi = 0.2;
550   - oNAo = 0.5;
  550 + //oNAi = 0.2;
  551 + //oNAo = 0.5;
551 552  
552   - double startNAi = 0.0;
553   - double startNAo = 0.3;
  553 + double startNAi = minIn;
  554 + double startNAo = minOut;
554 555  
555 556 //compute the optical parameters
556 557 //compute Nl (maximum order of the spectrum)
... ... @@ -574,7 +575,6 @@ void DistortionMap(float* distortionMap, int nSteps) {
574 575 progress.setWindowModality(Qt::WindowModal);
575 576  
576 577 double D;
577   - double e = 0.001;
578 578 int i, o;
579 579 for(i=0; i<nSteps; i++)
580 580 {
... ... @@ -586,34 +586,54 @@ void DistortionMap(float* distortionMap, int nSteps) {
586 586 break;
587 587  
588 588 //set the current optical parameters
589   - cNAi = startNAi + i * step;
590   - cNAo = startNAo + o * step;
  589 + cNAi = startNAi + i * step_in;
  590 + cNAo = startNAo + o * step_out;
591 591 //cout<<cNAi<<" "<<cNAo<<endl;
592 592  
593 593 //set the current optical parameters
594 594 //cNAi = i;
595 595 //cNAo = o;
596 596  
597   - //compute the optical parameters
598   - computeOpticalParameters(cAngleI, cAngleO, oAngleI, oAngleO, I0, alpha, Nl);
599 597  
600   - //simulate the spectrum
601   - cudaComputeSpectrum(I, (double*)B, alpha, Nl, nLambda, oAngleI, oAngleO, cAngleI, cAngleO, objectiveSamples);
602   - updateSpectrum(I, I0, nLambda);
  598 +
  599 + double EPSILON = 0.001;
603 600  
604 601 if(dispSimType == AbsorbanceSpecType)
605 602 {
606   - if(cNAi >= cNAo || cNAi >= oNAo || oNAi >= cNAo || oNAi >= oNAo)
607   - D = -1.0;
  603 + if(cNAi+EPSILON >= cNAo || oNAi+EPSILON >= oNAo || cNAi+EPSILON >= oNAo || oNAi+EPSILON >= cNAo)
  604 + D = -1;
  605 + //if(abs(cNAi - cNAo) < EPSILON || abs(oNAi - oNAo) < EPSILON)
  606 + // D = -1.0;
  607 + //else if(abs(cNAi - cNAo) < EPSILON || abs(oNAi - oNAo) < EPSILON)
  608 + // D = -2.0;
608 609 else
  610 + {
  611 + //compute the optical parameters
  612 + computeOpticalParameters(cAngleI, cAngleO, oAngleI, oAngleO, I0, alpha, Nl);
  613 +
  614 + //simulate the spectrum
  615 + cudaComputeSpectrum(I, (double*)B, alpha, Nl, nLambda, oAngleI, oAngleO, cAngleI, cAngleO, objectiveSamples);
  616 + updateSpectrum(I, I0, nLambda);
  617 +
  618 +
609 619 D = absorbanceDistortion();
  620 + }
610 621 }
611 622 else
612 623 {
613   - if(cNAi >= cNAo || oNAi >= oNAo)
  624 + if(abs(cNAi - cNAo) < EPSILON || abs(oNAi - oNAo) < EPSILON)
614 625 D = -1.0;
615 626 else
  627 + {
  628 + //compute the optical parameters
  629 + computeOpticalParameters(cAngleI, cAngleO, oAngleI, oAngleO, I0, alpha, Nl);
  630 +
  631 + //simulate the spectrum
  632 + cudaComputeSpectrum(I, (double*)B, alpha, Nl, nLambda, oAngleI, oAngleO, cAngleI, cAngleO, objectiveSamples);
  633 + updateSpectrum(I, I0, nLambda);
  634 +
616 635 D = intensityDistortion();
  636 + }
617 637 }
618 638 distortionMap[o * nSteps + i] = D;
619 639 outFile<<D<<" ";
... ...
distortiondialog.ui
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... ... @@ -6,8 +6,8 @@
6 6 <rect>
7 7 <x>0</x>
8 8 <y>0</y>
9   - <width>400</width>
10   - <height>300</height>
  9 + <width>377</width>
  10 + <height>173</height>
11 11 </rect>
12 12 </property>
13 13 <property name="windowTitle">
... ... @@ -16,8 +16,8 @@
16 16 <widget class="QPushButton" name="btnComputeDistortionMap">
17 17 <property name="geometry">
18 18 <rect>
19   - <x>300</x>
20   - <y>250</y>
  19 + <x>270</x>
  20 + <y>110</y>
21 21 <width>87</width>
22 22 <height>27</height>
23 23 </rect>
... ... @@ -26,6 +26,173 @@
26 26 <string>Compute</string>
27 27 </property>
28 28 </widget>
  29 + <widget class="QGroupBox" name="groupBox">
  30 + <property name="geometry">
  31 + <rect>
  32 + <x>10</x>
  33 + <y>20</y>
  34 + <width>131</width>
  35 + <height>81</height>
  36 + </rect>
  37 + </property>
  38 + <property name="title">
  39 + <string>Variable</string>
  40 + </property>
  41 + <widget class="QRadioButton" name="radioButton">
  42 + <property name="geometry">
  43 + <rect>
  44 + <x>20</x>
  45 + <y>20</y>
  46 + <width>105</width>
  47 + <height>21</height>
  48 + </rect>
  49 + </property>
  50 + <property name="text">
  51 + <string>condenser</string>
  52 + </property>
  53 + <property name="checked">
  54 + <bool>true</bool>
  55 + </property>
  56 + </widget>
  57 + <widget class="QRadioButton" name="radioButton_2">
  58 + <property name="geometry">
  59 + <rect>
  60 + <x>20</x>
  61 + <y>50</y>
  62 + <width>105</width>
  63 + <height>21</height>
  64 + </rect>
  65 + </property>
  66 + <property name="text">
  67 + <string>objective</string>
  68 + </property>
  69 + </widget>
  70 + </widget>
  71 + <widget class="QGroupBox" name="groupBox_2">
  72 + <property name="geometry">
  73 + <rect>
  74 + <x>160</x>
  75 + <y>20</y>
  76 + <width>101</width>
  77 + <height>80</height>
  78 + </rect>
  79 + </property>
  80 + <property name="title">
  81 + <string>inner NA</string>
  82 + </property>
  83 + <widget class="QDoubleSpinBox" name="spinInStart">
  84 + <property name="geometry">
  85 + <rect>
  86 + <x>20</x>
  87 + <y>20</y>
  88 + <width>62</width>
  89 + <height>25</height>
  90 + </rect>
  91 + </property>
  92 + <property name="maximum">
  93 + <double>1.000000000000000</double>
  94 + </property>
  95 + <property name="singleStep">
  96 + <double>0.010000000000000</double>
  97 + </property>
  98 + </widget>
  99 + <widget class="QDoubleSpinBox" name="spinInEnd">
  100 + <property name="geometry">
  101 + <rect>
  102 + <x>20</x>
  103 + <y>50</y>
  104 + <width>62</width>
  105 + <height>25</height>
  106 + </rect>
  107 + </property>
  108 + <property name="maximum">
  109 + <double>1.000000000000000</double>
  110 + </property>
  111 + <property name="singleStep">
  112 + <double>0.010000000000000</double>
  113 + </property>
  114 + <property name="value">
  115 + <double>1.000000000000000</double>
  116 + </property>
  117 + </widget>
  118 + </widget>
  119 + <widget class="QGroupBox" name="groupBox_3">
  120 + <property name="geometry">
  121 + <rect>
  122 + <x>280</x>
  123 + <y>20</y>
  124 + <width>101</width>
  125 + <height>80</height>
  126 + </rect>
  127 + </property>
  128 + <property name="title">
  129 + <string>outer NA</string>
  130 + </property>
  131 + <widget class="QDoubleSpinBox" name="spinOutStart">
  132 + <property name="geometry">
  133 + <rect>
  134 + <x>20</x>
  135 + <y>20</y>
  136 + <width>62</width>
  137 + <height>25</height>
  138 + </rect>
  139 + </property>
  140 + <property name="maximum">
  141 + <double>1.000000000000000</double>
  142 + </property>
  143 + <property name="singleStep">
  144 + <double>0.010000000000000</double>
  145 + </property>
  146 + </widget>
  147 + <widget class="QDoubleSpinBox" name="spinOutEnd">
  148 + <property name="geometry">
  149 + <rect>
  150 + <x>20</x>
  151 + <y>50</y>
  152 + <width>62</width>
  153 + <height>25</height>
  154 + </rect>
  155 + </property>
  156 + <property name="maximum">
  157 + <double>1.000000000000000</double>
  158 + </property>
  159 + <property name="singleStep">
  160 + <double>0.010000000000000</double>
  161 + </property>
  162 + <property name="value">
  163 + <double>1.000000000000000</double>
  164 + </property>
  165 + </widget>
  166 + </widget>
  167 + <widget class="QSpinBox" name="spinSteps">
  168 + <property name="geometry">
  169 + <rect>
  170 + <x>180</x>
  171 + <y>120</y>
  172 + <width>61</width>
  173 + <height>25</height>
  174 + </rect>
  175 + </property>
  176 + <property name="maximum">
  177 + <number>9999</number>
  178 + </property>
  179 + <property name="value">
  180 + <number>200</number>
  181 + </property>
  182 + </widget>
  183 + <widget class="QLabel" name="label">
  184 + <property name="geometry">
  185 + <rect>
  186 + <x>190</x>
  187 + <y>100</y>
  188 + <width>41</width>
  189 + <height>16</height>
  190 + </rect>
  191 + </property>
  192 + <property name="text">
  193 + <string>Steps</string>
  194 + </property>
  195 + </widget>
29 196 </widget>
30 197 <resources/>
31 198 <connections/>
... ...
etaPMMA.txt 0 → 100644
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  1 +#material file saved as [wavenumber,n,k]
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... ...
etaPolystyrene.txt 0 → 100644
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  1 +#material file saved as [wavenumber,n,k]
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... ...
globals.h
  Show/Hide comments   View file @887d444
... ... @@ -114,7 +114,7 @@ extern double refSlope;
114 114  
115 115 //distortion maps
116 116 double ComputeDistortion();
117   -void DistortionMap(float* distortionMap, int nSteps);
  117 +void DistortionMap(float* distortionMap, double minIn, double maxIn, double minOut, double maxOut, int nSteps, std::string filename);
118 118  
119 119  
120 120  
... ...
interactivemie.cpp
  Show/Hide comments   View file @887d444
... ... @@ -3,7 +3,7 @@
3 3  
4 4 qtDistortionDialog* distortionDialog;
5 5  
6   -InteractiveMie::InteractiveMie(QWidget *parent, Qt::WFlags flags)
  6 +InteractiveMie::InteractiveMie(QWidget *parent, Qt::WindowFlags flags)
7 7 : QMainWindow(parent, flags)
8 8 {
9 9 ui.setupUi(this);
... ...
interactivemie.h
  Show/Hide comments   View file @887d444
1 1 #ifndef INTERACTIVEMIE_H
2 2 #define INTERACTIVEMIE_H
3 3  
4   -#include <QtGui/QMainWindow>
  4 +#include <QtWidgets/QMainWindow>
5 5 #include <QDragEnterEvent>
  6 +#include <qmimedata.h>
6 7 #include <qfiledialog.h>
7 8 #include <qinputdialog.h>
8 9 #include "ui_interactivemie.h"
... ... @@ -16,7 +17,7 @@ class InteractiveMie : public QMainWindow
16 17 Q_OBJECT
17 18  
18 19 public:
19   -InteractiveMie(QWidget *parent = 0, Qt::WFlags flags = 0);
  20 +InteractiveMie(QWidget *parent = 0, Qt::WindowFlags flags = 0);
20 21 ~InteractiveMie();
21 22 void closeEvent(QCloseEvent *event);
22 23 bool updating;
... ... @@ -75,7 +76,7 @@ void dropEvent(QDropEvent *event)
75 76 {
76 77 //cout<<"Challenge Accepted."<<endl;
77 78 RefSpectrum.clear();
78   - RefSpectrum.push_back(SetReferenceSpectrum(event->mimeData()->text().toAscii().data()));
  79 + RefSpectrum.push_back(SetReferenceSpectrum(event->mimeData()->text().toLatin1().data()));
79 80 UpdateDisplay();
80 81 }
81 82  
... ... @@ -331,7 +332,7 @@ void on_mnuLoadReference_triggered() {
331 332  
332 333 if(fileName != QString::null) {
333 334 RefSpectrum.clear();
334   - RefSpectrum.push_back(LoadSpectrum(fileName.toAscii().data()));
  335 + RefSpectrum.push_back(LoadSpectrum(fileName.toLatin1().data()));
335 336 }
336 337 UpdateDisplay();
337 338 }
... ... @@ -355,7 +356,7 @@ void on_mnuLoadMaterial_triggered() {
355 356 LoadMaterial(kFileName.toAscii().data(), nFileName.toAscii().data(), matName.toAscii().data());
356 357 else
357 358 LoadMaterial(kFileName.toAscii().data(), matName.toAscii().data());*/
358   - LoadMaterial(fileName.toAscii().data(), matName.toAscii().data());
  359 + LoadMaterial(fileName.toLatin1().data(), matName.toLatin1().data());
359 360  
360 361 //add the new material to the combo box
361 362 refreshUI();
... ... @@ -374,7 +375,7 @@ void on_chkSourceSpectrum_clicked(bool b) {
374 375 void on_mnuSaveSim_triggered() {
375 376 //first load the imaginary part
376 377 QString fileName = QFileDialog::getSaveFileName(this, tr("Save Simulated Spectrum"));
377   - SaveSimulation(fileName.toAscii().data());
  378 + SaveSimulation(fileName.toLatin1().data());
378 379 }
379 380  
380 381 /*void on_mnuSaveK_triggered() {
... ... @@ -386,7 +387,7 @@ void on_mnuSaveSim_triggered() {
386 387 void on_mnuSaveMaterial_triggered() {
387 388 //first load the imaginary part
388 389 QString fileName = QFileDialog::getSaveFileName(this, tr("Save Real Index of Refraction (n)"));
389   - SaveMaterial(fileName.toAscii().data());
  390 + SaveMaterial(fileName.toLatin1().data());
390 391 }
391 392  
392 393  
... ...
interactivemie.ui
  Show/Hide comments   View file @887d444
... ... @@ -214,6 +214,9 @@
214 214 <height>22</height>
215 215 </rect>
216 216 </property>
  217 + <property name="decimals">
  218 + <number>3</number>
  219 + </property>
217 220 <property name="maximum">
218 221 <double>1.000000000000000</double>
219 222 </property>
... ... @@ -243,6 +246,9 @@
243 246 <height>22</height>
244 247 </rect>
245 248 </property>
  249 + <property name="decimals">
  250 + <number>3</number>
  251 + </property>
246 252 <property name="maximum">
247 253 <double>1.000000000000000</double>
248 254 </property>
... ... @@ -262,6 +268,9 @@
262 268 <height>22</height>
263 269 </rect>
264 270 </property>
  271 + <property name="decimals">
  272 + <number>3</number>
  273 + </property>
265 274 <property name="maximum">
266 275 <double>1.000000000000000</double>
267 276 </property>
... ... @@ -281,6 +290,9 @@
281 290 <height>22</height>
282 291 </rect>
283 292 </property>
  293 + <property name="decimals">
  294 + <number>3</number>
  295 + </property>
284 296 <property name="maximum">
285 297 <double>1.000000000000000</double>
286 298 </property>
... ... @@ -340,7 +352,7 @@
340 352 </rect>
341 353 </property>
342 354 <property name="maximum">
343   - <number>999</number>
  355 + <number>99999</number>
344 356 </property>
345 357 <property name="value">
346 358 <number>200</number>
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eta_polystyreneK.txt renamed to kPolystyrene.txt
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... ...
main.cpp
  Show/Hide comments   View file @887d444
... ... @@ -2,7 +2,7 @@
2 2 #include <iostream>
3 3 using namespace std;
4 4 #include "interactivemie.h"
5   -#include <QtGui/QApplication>
  5 +#include <QtWidgets/QApplication>
6 6 #include <QGraphicsScene>
7 7 #include <QGraphicsView>
8 8 #include <QGraphicsPixmapItem>
... ... @@ -120,7 +120,7 @@ void LoadMaterial(string fileName, string materialName)
120 120 newMaterial.validK = false;
121 121 //read the header
122 122 string units;
123   - getline(inFile, units, '\t');
  123 + //getline(inFile, units, '\t');
124 124 char c = 0;
125 125 while(c != '\n')
126 126 {
... ... @@ -154,7 +154,7 @@ void LoadMaterial(string fileName, string materialName)
154 154 float maxN = -9999;
155 155 float sumN = 0;
156 156 float maxK = 0;
157   - for(int i = 0; i<newMaterial.nu.size(); i++)
  157 + for(unsigned int i = 0; i<newMaterial.nu.size(); i++)
158 158 {
159 159 n = newMaterial.eta[i].real();
160 160 k = newMaterial.eta[i].imag();
... ... @@ -192,7 +192,6 @@ void ResampleSource()
192 192 int nMatSamples = EtaK.size();
193 193 int nSourceSamples = SourceSpectrum.size();
194 194  
195   - float nu, I;
196 195 for(int i=0; i<nMatSamples; i++)
197 196 {
198 197 SpecPair newSample;
... ... @@ -371,10 +370,13 @@ int main(int argc, char *argv[])
371 370  
372 371  
373 372 //load the default materials
374   - LoadMaterial("etaToluene.txt", "Toluene");
375   - LoadMaterial("kPMMA.txt", "PMMA");
376   - LoadMaterial("kPolyethylene.txt", "Polyethylene");
377   - LoadMaterial("kPTFE.txt", "Teflon");
  373 + //LoadMaterial("etaToluene.txt", "Toluene");
  374 + //LoadMaterial("kPolystyrene.txt", "Polystyrene");
  375 + LoadMaterial("etaPolystyrene.txt", "Polystyrene");
  376 + LoadMaterial("etaPMMA.txt", "PMMA");
  377 + //LoadMaterial("kPMMA.txt", "PMMA");
  378 + //LoadMaterial("kPolyethylene.txt", "Polyethylene");
  379 + //LoadMaterial("kPTFE.txt", "Teflon");
378 380  
379 381  
380 382 //LoadMaterial("eta_TolueneK.txt", "eta_TolueneN.txt", "Toluene");
... ...
qtDistortionDialog.cpp
  Show/Hide comments   View file @887d444
1 1 #include "qtDistortionDialog.h"
2 2  
3   -qtDistortionDialog::qtDistortionDialog(QWidget *parent, Qt::WFlags flags)
  3 +qtDistortionDialog::qtDistortionDialog(QWidget *parent, Qt::WindowFlags flags)
4 4 : QDialog(parent, flags)
5 5 {
6 6 ui.setupUi(this);
... ...
qtDistortionDialog.h
  Show/Hide comments   View file @887d444
1 1 #ifndef DISTORTIONDIALOG_H
2 2 #define DISTORTIONDIALOG_H
3 3  
4   -#include <QtGui/QDialog>
  4 +#include <QtWidgets/QDialog>
5 5 #include <QDragEnterEvent>
6 6 #include <QGraphicsScene>
7 7 #include <QGraphicsView>
... ... @@ -20,7 +20,7 @@ class qtDistortionDialog : public QDialog
20 20 Q_OBJECT
21 21  
22 22 public:
23   - qtDistortionDialog(QWidget *parent = 0, Qt::WFlags flags = 0);
  23 + qtDistortionDialog(QWidget *parent = 0, Qt::WindowFlags flags = 0);
24 24 ~qtDistortionDialog();
25 25 bool updating;
26 26  
... ... @@ -30,7 +30,10 @@ private:
30 30 public slots:
31 31 void on_btnComputeDistortionMap_clicked() {
32 32  
33   - int steps = 100;
  33 + //get the filename
  34 + QString filename = QFileDialog::getSaveFileName(NULL, "Distortion File");
  35 +
  36 + int steps = ui.spinSteps->value();
34 37  
35 38 //delete the pixmap if one previously existed
36 39 if(pixmapItem != NULL)
... ... @@ -41,10 +44,16 @@ public slots:
41 44  
42 45 QColor color(255, 255, 0);
43 46  
  47 + double minIn, maxIn, minOut, maxOut;
  48 +
  49 + minIn = ui.spinInStart->value();
  50 + maxIn = ui.spinInEnd->value();
  51 + minOut = ui.spinOutStart->value();
  52 + maxOut = ui.spinOutEnd->value();
44 53  
45   - //compute the distortion map
  54 + //compute the distortion map (2D steps x steps image)
46 55 float* distortionMap = (float*)malloc(sizeof(float) * steps * steps);
47   - DistortionMap(distortionMap, steps);
  56 + DistortionMap(distortionMap, minIn, maxIn, minOut, maxOut, steps, filename.toUtf8().constData());
48 57  
49 58 //compute the extrema
50 59 float minDistortion = 99999;
... ... @@ -56,6 +65,9 @@ public slots:
56 65 maxDistortion = distortionMap[i];
57 66 }
58 67 cout<<minDistortion<<"----------"<<maxDistortion<<endl;
  68 + FILE* outraw = fopen("out.raw", "wb");
  69 + fwrite(distortionMap, sizeof(float), steps * steps, outraw);
  70 + fclose(outraw);
59 71  
60 72 //compute the distortion map image
61 73 int i, o;
... ... @@ -67,7 +79,7 @@ public slots:
67 79 intensity = (v - minDistortion) / (maxDistortion - minDistortion) * 255;
68 80  
69 81 if(intensity < 0) {
70   - cout<<"low intensity"<<endl;
  82 + //cout<<"low intensity"<<endl;
71 83 intensity = 0;
72 84 }
73 85  
... ...
qtSpectrumDisplay.cpp
  Show/Hide comments   View file @887d444
... ... @@ -107,11 +107,6 @@ void qtSpectrumDisplay::paintGL()
107 107  
108 108 //compute the maximum k and n
109 109 int nSamples = MaterialList[currentMaterial].eta.size();
110   - float maxK = 0.0;
111   - float maxN = 0.0;
112   - float thisN, thisK;
113   -
114   -
115 110  
116 111 //************* Draw k **************************
117 112 //change the viewport properties and draw n
... ... @@ -200,7 +195,6 @@ void qtSpectrumDisplay::paintGL()
200 195  
201 196 void qtSpectrumDisplay::resizeGL(int width, int height)
202 197 {
203   - int side = qMin(width, height);
204 198  
205 199  
206 200 }
... ... @@ -211,16 +205,12 @@ void qtSpectrumDisplay::mousePressEvent(QMouseEvent *event)
211 205  
212 206 if(event->buttons() & Qt::LeftButton)
213 207 {
214   - int wn = 0;
215 208 printWavenumber(event->x());
216 209 }
217 210 }
218 211  
219 212 void qtSpectrumDisplay::mouseMoveEvent(QMouseEvent *event)
220 213 {
221   - int dx = event->x() - lastPos.x();
222   - int dy = event->y() - lastPos.y();
223   -
224 214 lastPos = event->pos();
225 215 }
226 216  
... ...
qwtSpectrumDisplay.cpp 0 → 100644
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qwtSpectrumDisplay.h 0 → 100644
  Show/Hide comments   View file @887d444
  1 +#include <qwt/qwt_plot.h>
  2 +#include <qwt/qwt_plot_curve.h>
  3 +
  4 +#include <vector>
  5 +#include <QVector>
  6 +#include "globals.h"
  7 +
  8 +class qwtSpectrumDisplay
  9 +{
  10 + QwtPlot* mainPlot;
  11 +
  12 + QwtPlotCurve* simSpectrum;
  13 +
  14 +
  15 +
  16 +public:
  17 + qwtSpectrumDisplay()
  18 + {
  19 + mainPlot = new QwtPlot();
  20 + simSpectrum = new QwtPlotCurve("Simulated Spectrum");
  21 +
  22 + //set colors
  23 + mainPlot->setCanvasBackground(QBrush(Qt::black));
  24 + simSpectrum->setPen(QPen(Qt::white));
  25 +
  26 + //attach curves
  27 + simSpectrum->attach(mainPlot);
  28 +
  29 + //display the plot
  30 + mainPlot->show();
  31 + }
  32 +
  33 + void updateCurves()
  34 + {
  35 + //create qVectors to store curve values
  36 + QVector<double> qNu;
  37 + QVector<double> qV;
  38 +
  39 + //update the simulation
  40 + for(int i = 0; i < SimSpectrum.size(); i++)
  41 + {
  42 + qNu.push_back(SimSpectrum[i].nu);
  43 + qV.push_back(SimSpectrum[i].A);
  44 + }
  45 + simSpectrum->setSamples(qNu, qV);
  46 + }
  47 +
  48 + void replot()
  49 + {
  50 + //set the appropriate axis title
  51 + mainPlot->setAxisTitle(2, "Wavenumber (cm^-1)");
  52 + if(dispSimType == AbsorbanceSpecType)
  53 + mainPlot->setAxisTitle(0, "Absorbance (a.u.)");
  54 + else if(dispSimType == IntensitySpecType)
  55 + mainPlot->setAxisTitle(0, "Intensity (a.u.)");
  56 +
  57 + updateCurves();
  58 +
  59 + mainPlot->replot();
  60 + }
  61 +
  62 +};
... ...