optics / ricalc

Commit 1b0b5c1d96632608c05635cff8079b688b2ae61e

Authored by dmayerich
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first commit

Showing 11 changed files with 3485 additions and 0 deletions   Show diff stats
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CMakeLists.txt 0 → 100644
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  1 +++ a/CMakeLists.txt
  1 +#Specify the version being used aswell as the language
  2 +cmake_minimum_required(VERSION 2.8)
  3 +#Name your project here
  4 +project(ricalc)
  5 +
  6 +#set the module directory
  7 +set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}")
  8 +
  9 +#find BOOST
  10 +set(Boost_USE_STATIC_LIBS ON)
  11 +set(Boost_USE_MULTITHREADED ON)
  12 +set(Boost_USE_STATIC_RUNTIME OFF)
  13 +find_package( Boost 1.54.0 COMPONENTS program_options )
  14 +
  15 +#set up CUDA
  16 +find_package(CUDA)
  17 +if(CUDA_FOUND)
  18 + link_libraries(${CUDA_cufft_LIBRARY})
  19 + add_definitions(-DCUDA_AVAILABLE)
  20 +endif(CUDA_FOUND)
  21 +
  22 +#set up the FFTW package (fast Fourier transform)
  23 +find_package(FFTW)
  24 +if(FFTW_FOUND)
  25 + include_directories(${FFTW_INCLUDE_DIR})
  26 + link_libraries(${FFTW_LIBRARY})
  27 + add_definitions(-DFFTW_AVAILABLE)
  28 +endif(FFTW_FOUND)
  29 +
  30 +#ask the user for the RTS location
  31 +set(RTS_ROOT_PATH $ENV{RTS_ROOT_PATH})
  32 +find_package(RTS REQUIRED)
  33 +
  34 +#set the include directories
  35 +include_directories(
  36 + ${CMAKE_CURRENT_BINARY_DIR}
  37 + ${RTS_INCLUDE_DIR}
  38 + ${Boost_INCLUDE_DIR}
  39 +)
  40 +
  41 +#enable warnings
  42 +if(CMAKE_COMPILER_IS_GNUCC OR CMAKE_COMPILER_IS_GNUCXX)
  43 + add_definitions(-Wall -lfftw3 -lm)
  44 +endif()
  45 +
  46 +#Assign source files to the appropriate variables
  47 +file(GLOB SRC_CPP "*.cpp")
  48 +file(GLOB SRC_H "*.h")
  49 +file(GLOB SRC_CU "*.cu")
  50 +
  51 +#copy example material files
  52 +configure_file(etaPolyethylene.txt ${CMAKE_CURRENT_BINARY_DIR}/etaPolyethylene.txt COPYONLY)
  53 +configure_file(etaTeflon.txt ${CMAKE_CURRENT_BINARY_DIR}/etaTeflon.txt COPYONLY)
  54 +configure_file(etaToluene.txt ${CMAKE_CURRENT_BINARY_DIR}/etaToluene.txt COPYONLY)
  55 +
  56 +
  57 +#create an executable
  58 +cuda_add_executable(ricalc ${SRC_CPP} ${SRC_H} ${SRC_CU})
  59 +
  60 +#set the link libraries
  61 +target_link_libraries(ricalc ${Boost_LIBRARIES})
  62 +
  63 +
  64 +
... ...
FindCUDASDK.cmake 0 → 100644
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  1 +++ a/FindCUDASDK.cmake
  1 +#
  2 +# The script defines the following variables:
  3 +#
  4 +##############################################################################
  5 +# Note: Removed everything related to CUDA_SDK_ROOT_DIR and only left this as
  6 +# a possible environment variable to set the SDK directory.
  7 +# Include file will be: CUDA_CUT_INCLUDE_DIR
  8 +# Cutil library: CUDA_CUT_LIBRARY
  9 +##############################################################################
  10 +#
  11 +#
  12 +# CUDA_SDK_ROOT_DIR -- Path to the CUDA SDK. Use this to find files in the
  13 +# SDK. This script will not directly support finding
  14 +# specific libraries or headers, as that isn't
  15 +# supported by NVIDIA. If you want to change
  16 +# libraries when the path changes see the
  17 +# FindCUDA.cmake script for an example of how to clear
  18 +# these variables. There are also examples of how to
  19 +# use the CUDA_SDK_ROOT_DIR to locate headers or
  20 +# libraries, if you so choose (at your own risk).
  21 +#
  22 +# This code is licensed under the MIT License. See the FindCUDASDK.cmake script
  23 +# for the text of the license.
  24 +
  25 +# The MIT License
  26 +#
  27 +# License for the specific language governing rights and limitations under
  28 +# Permission is hereby granted, free of charge, to any person obtaining a
  29 +# copy of this software and associated documentation files (the "Software"),
  30 +# to deal in the Software without restriction, including without limitation
  31 +# the rights to use, copy, modify, merge, publish, distribute, sublicense,
  32 +# and/or sell copies of the Software, and to permit persons to whom the
  33 +# Software is furnished to do so, subject to the following conditions:
  34 +#
  35 +# The above copyright notice and this permission notice shall be included
  36 +# in all copies or substantial portions of the Software.
  37 +#
  38 +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
  39 +# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  40 +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
  41 +# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  42 +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
  43 +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
  44 +# DEALINGS IN THE SOFTWARE.
  45 +#
  46 +###############################################################################
  47 +
  48 +# FindCUDASDK.cmake
  49 +
  50 +# # Check to see if the CUDA_SDK_ROOT_DIR has changed,
  51 +# # if it has then clear the cache variable, so that it will be detected again.
  52 +# if(NOT "${CUDA_SDK_ROOT_DIR}" STREQUAL "${CUDA_SDK_ROOT_DIR_INTERNAL}")
  53 +# # No specific variables to catch. Use this kind of code before calling
  54 +# # find_package(CUDA) to clean up any variables that may depend on this path.
  55 +#
  56 +# # unset(MY_SPECIAL_CUDA_SDK_INCLUDE_DIR CACHE)
  57 +# # unset(MY_SPECIAL_CUDA_SDK_LIBRARY CACHE)
  58 +# endif()
  59 +#
  60 +# ########################
  61 +# # Look for the SDK stuff
  62 +# find_path(CUDA_SDK_ROOT_DIR cutil.h
  63 +# PATH_SUFFIXES "common/inc" "C/common/inc"
  64 +# "$ENV{NVSDKCUDA_ROOT}"
  65 +# "[HKEY_LOCAL_MACHINE\\SOFTWARE\\NVIDIA Corporation\\Installed Products\\NVIDIA SDK 10\\Compute;InstallDir]"
  66 +# "/Developer/GPU\ Computing/C"
  67 +# )
  68 +#
  69 +# # fallback method for determining CUDA_SDK_ROOT_DIR in case the previous one failed!
  70 +# if (NOT CUDA_SDK_ROOT_DIR)
  71 +# find_path(CUDA_SDK_ROOT_DIR C/common/inc/cutil.h
  72 +# "$ENV{NVSDKCUDA_ROOT}"
  73 +# "[HKEY_LOCAL_MACHINE\\SOFTWARE\\NVIDIA Corporation\\Installed Products\\NVIDIA SDK 10\\Compute;InstallDir]"
  74 +# "/Developer/GPU\ Computing/C"
  75 +# )
  76 +# endif()
  77 +
  78 +# Keep the CUDA_SDK_ROOT_DIR first in order to be able to override the
  79 +# environment variables.
  80 +set(CUDA_SDK_SEARCH_PATH
  81 + "${CUDA_SDK_ROOT_DIR}"
  82 + "${CUDA_TOOLKIT_ROOT_DIR}/local/NVSDK0.2"
  83 + "${CUDA_TOOLKIT_ROOT_DIR}/NVSDK0.2"
  84 + "${CUDA_TOOLKIT_ROOT_DIR}/NV_SDK"
  85 + "${CUDA_TOOLKIT_ROOT_DIR}/NV_CUDA_SDK"
  86 + "$ENV{HOME}/NVIDIA_CUDA_SDK"
  87 + "$ENV{HOME}/NVIDIA_CUDA_SDK_MACOSX"
  88 + "$ENV{HOME}/NVIDIA_GPU_Computing_SDK"
  89 + "/Developer/CUDA"
  90 + )
  91 +
  92 +# Find include file from the CUDA_SDK_SEARCH_PATH
  93 +
  94 +find_path(CUDA_CUT_INCLUDE_DIR
  95 + cutil.h
  96 + PATHS ${CUDA_SDK_SEARCH_PATH}
  97 + PATH_SUFFIXES "common/inc" "C/common/inc"
  98 + DOC "Location of cutil.h"
  99 + NO_DEFAULT_PATH
  100 + )
  101 +# Now search system paths
  102 +find_path(CUDA_CUT_INCLUDE_DIR cutil.h DOC "Location of cutil.h")
  103 +
  104 +# mark_as_advanced(CUDA_CUT_INCLUDE_DIR)
  105 +
  106 +
  107 +# Example of how to find a library in the CUDA_SDK_ROOT_DIR
  108 +
  109 +# cutil library is called cutil64 for 64 bit builds on windows. We don't want
  110 +# to get these confused, so we are setting the name based on the word size of
  111 +# the build.
  112 +
  113 +# New library might be called cutil_x86_64 !
  114 +
  115 +if(CMAKE_SIZEOF_VOID_P EQUAL 8)
  116 + set(cuda_cutil_name cutil64)
  117 +else(CMAKE_SIZEOF_VOID_P EQUAL 8)
  118 + set(cuda_cutil_name cutil32)
  119 +endif(CMAKE_SIZEOF_VOID_P EQUAL 8)
  120 +
  121 +find_library(CUDA_CUT_LIBRARY
  122 + NAMES ${cuda_cutil_name} cutil cutil_x86_64 cutil_i386
  123 + PATHS ${CUDA_SDK_SEARCH_PATH}
  124 + # The new version of the sdk shows up in common/lib, but the old one is in lib
  125 + # The very newest installation Path of the SDK is in subdirectory 'C'. Please add this Path to the possible suffixes.
  126 + PATH_SUFFIXES "C/lib" "common/lib" "lib" "C/common/lib" "common/lib"
  127 + DOC "Location of cutil library"
  128 + NO_DEFAULT_PATH
  129 + )
  130 +# # Now search system paths
  131 +# find_library(CUDA_CUT_LIBRARY NAMES cutil ${cuda_cutil_name} DOC "Location of cutil library")
  132 +mark_as_advanced(CUDA_CUT_LIBRARY)
  133 +set(CUDA_CUT_LIBRARIES ${CUDA_CUT_LIBRARY})
  134 +
  135 +#############################
  136 +# Check for required components
  137 +if(CUDA_CUT_INCLUDE_DIR)
  138 + set(CUDASDK_FOUND TRUE)
  139 +endif(CUDA_CUT_INCLUDE_DIR)
  140 +
  141 +# set(CUDA_SDK_ROOT_DIR_INTERNAL "${CUDA_SDK_ROOT_DIR}" CACHE INTERNAL
  142 +# "This is the value of the last time CUDA_SDK_ROOT_DIR was set successfully." FORCE)
... ...
FindFFTW.cmake 0 → 100644
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  1 +++ a/FindFFTW.cmake
  1 +# - Find the native FFTW includes and library
  2 +#
  3 +# This module defines
  4 +#
  5 +# FFTW_INCLUDE_DIR, where to find fftw3.h, etc.
  6 +# FFTW_LIBRARY, the libraries to link against to use FFTW.
  7 +#
  8 +# FFTW_FOUND
  9 +#
  10 +# Was borrowed from http://houdini-ocean-toolkit.googlecode.com
  11 +#
  12 +
  13 +find_path(FFTW_INCLUDE_DIR fftw3.h
  14 + PATHS ${CMAKE_SOURCE_DIR}/../3rdparty/include;
  15 + ${CMAKE_SOURCE_DIR}/3rdparty/include)
  16 +
  17 +find_library(FFTW_LIBRARY fftw3
  18 + PATHS ${CMAKE_SOURCE_DIR}/../3rdparty/lib;
  19 + ${CMAKE_SOURCE_DIR}/3rdparty/lib)
  20 +
  21 +if (FFTW_INCLUDE_DIR AND FFTW_LIBRARY)
  22 + set(FFTW_FOUND TRUE)
  23 +else (FFTW_INCLUDE_DIR AND FFTW_LIBRARY)
  24 + set(FFTW_FOUND FALSE)
  25 +endif (FFTW_INCLUDE_DIR AND FFTW_LIBRARY)
... ...
FindRTS.cmake 0 → 100644
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  1 +++ a/FindRTS.cmake
  1 +# Tries to find the RTS include directory
  2 +
  3 + FIND_PATH( RTS_INCLUDE_DIR NAMES rts_glShaderProgram.h
  4 + PATHS
  5 + ${CMAKE_CURRENT_SOURCE_DIR}/rts
  6 + ${RTS_ROOT_PATH}
  7 +)
  8 +
  9 +IF (RTS_FOUND)
  10 + #The following deprecated settings are for backwards compatibility with CMake1.4
  11 + SET (RTS_INCLUDE_PATH ${RTS_INCLUDE_DIR})
  12 +ENDIF(RTS_FOUND)
  13 +
  14 +FIND_PACKAGE_HANDLE_STANDARD_ARGS(RTS REQUIRED_VARS TRUE RTS_INCLUDE_DIR)
... ...
README.md 0 → 100644
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  1 +++ a/README.md
  1 +Computes the dispersion of a material given material properties. For example, given an absorbance spectrum, this software can estimate the complex refractive index and Chi values.
  2 +
  3 +A Windows 32 executable is provided in the Win32 directory. All of the necessary runtime libraries are included. Start by running 'ricalc -h' for command-line options.
  4 +
  5 +This software is designed to be used with CMake, so we recommend using it to build the application.
  6 +
  7 +This software requires the following libraries for compiling:
  8 +
  9 +FFTW - Fast Fourier Transform library -- http://www.fftw.org
  10 + or
  11 +CUDA - NVidia's GPU programming toolkit -- https://developer.nvidia.com/
  12 +
  13 +RTS - Real-Time Scraps C++ library (my codebase) -- https://github.com/dmayerich/RTS
  14 +
  15 +
  16 +
  17 +
  18 +
  19 +
... ...
Win32/libfftw3-3.dll 0 → 100644
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Win32/ricalc.exe 0 → 100644
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etaPolyethylene.txt 0 → 100644
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  1 +++ a/etaPolyethylene.txt
  1 +#nu n k
  2 +898.666 1.54119 0.00042801
  3 +902.523 1.54118 0.00038246
  4 +906.38 1.541 0.00040294
  5 +910.237 1.54094 0.00039488
  6 +914.094 1.54085 0.00037618
  7 +917.95 1.54084 0.0003536
  8 +921.807 1.54082 0.0003278
  9 +925.664 1.54081 0.0003156
  10 +929.521 1.54084 0.00028804
  11 +933.378 1.54084 0.00032099
  12 +937.235 1.54084 0.00031952
  13 +941.092 1.54084 0.00033633
  14 +944.949 1.54087 0.00036991
  15 +948.806 1.54083 0.00040887
  16 +952.663 1.54078 0.00044517
  17 +956.52 1.54076 0.00043966
  18 +960.377 1.54073 0.00044863
  19 +964.234 1.54068 0.00044314
  20 +968.091 1.54065 0.00045241
  21 +971.948 1.54062 0.00043188
  22 +975.804 1.54052 0.00039329
  23 +979.661 1.54055 0.00034324
  24 +983.518 1.54054 0.00027772
  25 +987.375 1.54053 0.00024005
  26 +991.232 1.54061 0.00018819
  27 +995.089 1.54062 0.00017644
  28 +998.946 1.54068 0.0001743
  29 +1002.8 1.5407 0.0001892
  30 +1006.66 1.54073 0.00022698
  31 +1010.52 1.54072 0.00025522
  32 +1014.37 1.54074 0.00027914
  33 +1018.23 1.54071 0.00028447
  34 +1022.09 1.54068 0.00030539
  35 +1025.94 1.54067 0.00030134
  36 +1029.8 1.54064 0.00030709
  37 +1033.66 1.54061 0.00030649
  38 +1037.52 1.54057 0.00027764
  39 +1041.37 1.54054 0.00024089
  40 +1045.23 1.54051 0.00017639
  41 +1049.09 1.54056 0.00013155
  42 +1052.94 1.54056 7.972e-005
  43 +1056.8 1.54061 4.678e-005
  44 +1060.66 1.54065 2.414e-005
  45 +1064.51 1.54066 6.56e-006
  46 +1068.37 1.54075 4.52e-006
  47 +1072.23 1.54077 1.86e-006
  48 +1076.08 1.54081 3.15e-005
  49 +1079.94 1.54086 5.205e-005
  50 +1083.8 1.54083 9.191e-005
  51 +1087.66 1.54083 0.00012551
  52 +1091.51 1.54082 0.00013487
  53 +1095.37 1.54082 0.0001366
  54 +1099.23 1.54081 0.00012324
  55 +1103.08 1.54082 0.00011624
  56 +1106.94 1.5408 9.228e-005
  57 +1110.8 1.54081 7.841e-005
  58 +1114.65 1.54084 5.534e-005
  59 +1118.51 1.54084 3.409e-005
  60 +1122.37 1.54087 1.855e-005
  61 +1126.22 1.54091 0
  62 +1130.08 1.54097 7.19e-006
  63 +1133.94 1.54103 1.989e-005
  64 +1137.8 1.54105 5.403e-005
  65 +1141.65 1.54112 8.195e-005
  66 +1145.51 1.54112 0.00012699
  67 +1149.37 1.54114 0.0001768
  68 +1153.22 1.54114 0.00021147
  69 +1157.08 1.54112 0.00025829
  70 +1160.94 1.54113 0.00029061
  71 +1164.79 1.54108 0.00032397
  72 +1168.65 1.54108 0.00034385
  73 +1172.51 1.54107 0.00036836
  74 +1176.36 1.54104 0.0003735
  75 +1180.22 1.54101 0.00035023
  76 +1184.08 1.54101 0.00033782
  77 +1187.94 1.541 0.00032161
  78 +1191.79 1.54104 0.00032158
  79 +1195.65 1.54104 0.00031863
  80 +1199.51 1.54107 0.00033038
  81 +1203.36 1.54108 0.00035069
  82 +1207.22 1.54107 0.00037485
  83 +1211.08 1.54113 0.00041366
  84 +1214.93 1.54108 0.00045119
  85 +1218.79 1.54104 0.0004902
  86 +1222.65 1.54106 0.00050622
  87 +1226.51 1.54101 0.00053244
  88 +1230.36 1.54099 0.00054526
  89 +1234.22 1.54095 0.00054043
  90 +1238.08 1.54092 0.00053686
  91 +1241.93 1.54086 0.00051393
  92 +1245.79 1.54085 0.00049385
  93 +1249.65 1.54085 0.00045921
  94 +1253.5 1.54083 0.00043153
  95 +1257.36 1.54087 0.00041048
  96 +1261.22 1.54087 0.00039754
  97 +1265.07 1.54086 0.00038579
  98 +1268.93 1.54086 0.00037209
  99 +1272.79 1.54091 0.00037321
  100 +1276.65 1.54089 0.00036889
  101 +1280.5 1.54092 0.00038267
  102 +1284.36 1.54093 0.00039353
  103 +1288.22 1.54091 0.00040998
  104 +1292.07 1.54092 0.00042425
  105 +1295.93 1.54088 0.0004231
  106 +1299.79 1.54087 0.00042156
  107 +1303.64 1.54088 0.0004027
  108 +1307.5 1.54081 0.00038994
  109 +1311.36 1.5408 0.00035638
  110 +1315.21 1.54081 0.00031839
  111 +1319.07 1.54081 0.00027074
  112 +1322.93 1.54083 0.00022097
  113 +1326.79 1.54089 0.00019314
  114 +1330.64 1.54091 0.00016466
  115 +1334.5 1.54099 0.0001724
  116 +1338.36 1.541 0.00019304
  117 +1342.21 1.54104 0.00020191
  118 +1346.07 1.54107 0.00020463
  119 +1349.93 1.54106 0.00022886
  120 +1353.78 1.5411 0.00024824
  121 +1357.64 1.54113 0.00026467
  122 +1361.5 1.54111 0.00032192
  123 +1365.35 1.54108 0.0003319
  124 +1369.21 1.54108 0.00032069
  125 +1373.07 1.54105 0.00029896
  126 +1376.93 1.54105 0.00025182
  127 +1380.78 1.54107 0.00020386
  128 +1384.64 1.54113 0.0001788
  129 +1388.5 1.54116 0.00017692
  130 +1392.35 1.54121 0.0001595
  131 +1396.21 1.54127 0.00018172
  132 +1400.07 1.5413 0.00017101
  133 +1403.92 1.54136 0.0001655
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  135 +1411.64 1.54146 0.00019087
  136 +1415.49 1.54156 0.00025939
  137 +1419.35 1.54158 0.00030871
  138 +1423.21 1.54164 0.00033849
  139 +1427.07 1.54165 0.00035628
  140 +1430.92 1.54177 0.000422
  141 +1434.78 1.54179 0.00051804
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  144 +1446.35 1.54205 0.00063101
  145 +1450.21 1.54229 0.00074238
  146 +1454.06 1.54272 0.00099416
  147 +1457.92 1.54287 0.00209105
  148 +1461.78 1.54195 0.00321291
  149 +1465.64 1.54094 0.0028369
  150 +1469.49 1.54041 0.00267381
  151 +1473.35 1.53961 0.00253731
  152 +1477.21 1.53925 0.00128331
  153 +1481.06 1.53969 0.0006213
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  158 +1500.35 1.54061 0.00054085
  159 +1504.2 1.54068 0.00058144
  160 +1508.06 1.54061 0.00064828
  161 +1511.92 1.5406 0.00055856
  162 +1515.78 1.54067 0.00052929
  163 +1519.63 1.54066 0.00059563
  164 +1523.49 1.54066 0.0005584
  165 +1527.35 1.54065 0.00048296
  166 +1531.2 1.54072 0.00043625
  167 +1535.06 1.54079 0.00046385
  168 +1538.92 1.5408 0.00056596
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  170 +1546.63 1.54071 0.00043963
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  173 +1558.2 1.54081 0.00058085
  174 +1562.06 1.54073 0.00049177
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  177 +1573.63 1.54075 0.00042759
  178 +1577.49 1.54079 0.00040069
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  180 +1585.2 1.54084 0.00031186
  181 +1589.06 1.54086 0.00031601
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  187 +1612.2 1.54103 0.00028776
  188 +1616.06 1.54106 0.00033643
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  192 +1631.48 1.54112 0.00034108
  193 +1635.34 1.54112 0.00042011
  194 +1639.2 1.54112 0.00038127
  195 +1643.05 1.54115 0.00036647
  196 +1646.91 1.54119 0.0004247
  197 +1650.77 1.54112 0.00048308
  198 +1654.62 1.54103 0.00045178
  199 +1658.48 1.54108 0.00034997
  200 +1662.34 1.54111 0.00034021
  201 +1666.2 1.54118 0.00036197
  202 +1670.05 1.54121 0.00038175
  203 +1673.91 1.54122 0.00039106
  204 +1677.77 1.54127 0.00037529
  205 +1681.62 1.5413 0.00045005
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... ...
etaTeflon.txt 0 → 100644
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  1 +++ a/etaTeflon.txt
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