segmentation / netmets

Commit b31bfd7d00365214d5a5df42651cba1e52fe2c64

Authored by David Mayerich
1 parent 8d519daa

added SWC files as examples

Showing 5 changed files with 796 additions and 8 deletions   Show diff stats
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@@ -82,3 +82,5 @@ configure_file(data/03_T.obj ${CMAKE_CURRENT_BINARY_DIR}/03_T.obj @ONLY) @@ -82,3 +82,5 @@ configure_file(data/03_T.obj ${CMAKE_CURRENT_BINARY_DIR}/03_T.obj @ONLY)
82 configure_file(data/04_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/04_GT.obj @ONLY) 82 configure_file(data/04_GT.obj ${CMAKE_CURRENT_BINARY_DIR}/04_GT.obj @ONLY)
83 configure_file(data/04_Ta.obj ${CMAKE_CURRENT_BINARY_DIR}/04_Ta.obj @ONLY) 83 configure_file(data/04_Ta.obj ${CMAKE_CURRENT_BINARY_DIR}/04_Ta.obj @ONLY)
84 configure_file(data/04_Tb.obj ${CMAKE_CURRENT_BINARY_DIR}/04_Tb.obj @ONLY) 84 configure_file(data/04_Tb.obj ${CMAKE_CURRENT_BINARY_DIR}/04_Tb.obj @ONLY)
  85 +configure_file(data/1.swc ${CMAKE_CURRENT_BINARY_DIR}/1.swc @ONLY)
  86 +configure_file(data/2.swc ${CMAKE_CURRENT_BINARY_DIR}/2.swc @ONLY)
data/00_GT.swc 0 → 100644
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data/1.swc 0 → 100644
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  1 +# Original file 20F-40x.swc edited using StdSwc version 1.31 on 5/6/15.
  2 +# Irregularities and fixes documented in 20F-40x.swc.std. See StdSwc1.31.doc for more information.
  3 +#
  4 +# Neurolucida to SWC conversion from L-Measure. Sridevi Polavaram: spolavar@gmu.edu
  5 +# Original fileName:C:\Users\praveen\Desktop\DataProcessing\CurrentArchives\To be processed\Bianchi\ASC 2\20F-40x.asc
  6 +#The original file has a single soma contour that is averaged into 3 soma points
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data/2.swc 0 → 100644
  Show/Hide comments   View file @b31bfd7
  1 +# Original file 20D-40x.swc edited using StdSwc version 1.31 on 5/6/15.
  2 +# Irregularities and fixes documented in 20D-40x.swc.std. See StdSwc1.31.doc for more information.
  3 +#
  4 +# Neurolucida to SWC conversion from L-Measure. Sridevi Polavaram: spolavar@gmu.edu
  5 +# Original fileName:C:\Users\praveen\Desktop\DataProcessing\CurrentArchives\To be processed\Bianchi\ASC 2\20D-40x.asc
  6 +#The original file has a single soma contour that is averaged into 3 soma points
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  329 +323 4 23.7 -33.98 -16.6 0.765 291
  330 +324 4 23.84 -34.1 -16.62 0.765 323
  331 +325 4 28.56 -40.51 -21.74 1.19 324
  332 +326 4 32.85 -45.96 -28.37 0.765 325
  333 +327 4 32.93 -46.09 -28.26 0.765 326
  334 +328 4 35.52 -50.8 -32.07 0.765 327
  335 +329 4 35.62 -50.92 -32.02 0.765 328
  336 +330 4 37.07 -51.79 -32.86 0.085 329
  337 +331 4 37.84 -53.1 -32.54 0.51 330
  338 +332 4 38.6 -54.41 -32.22 0.51 331
  339 +333 4 31.04 -53.38 -36.93 0.17 331
  340 +334 4 29.27 -54.59 -40.09 0.17 333
  341 +335 4 29.16 -54.71 -40.15 0.17 334
  342 +336 4 23.09 -61.28 -37.01 0.17 335
  343 +337 4 23.01 -61.39 -37.15 0.17 336
  344 +338 4 22.02 -64.69 -37.75 0.17 337
  345 +339 4 19.18 -65.23 -39.14 0.085 338
  346 +340 4 19.1 -65.34 -39.26 0.085 339
  347 +341 4 16.36 -68.94 -39.88 0.085 340
  348 +342 4 14.33 -68.92 -40.93 0.085 341
  349 +343 4 39.4 -52.66 -31.7 0.085 330
  350 +344 4 39.51 -52.55 -31.64 0.085 343
  351 +345 4 43.96 -47.66 -29.39 0.085 344
  352 +346 4 45.15 -46.9 -28.71 0.085 345
  353 +347 4 50.87 -42.1 -25.77 0.085 346
  354 +348 4 50.76 -41.97 -25.82 0.085 347
  355 +349 4 31.6 -41.12 -21.47 0.17 325
  356 +350 4 31.49 -40.78 -20.93 0.17 349
  357 +351 4 30.29 -39.6 -17.42 0.17 350
  358 +352 4 30.46 -39.52 -16.92 0.17 351
  359 +353 4 31.46 -38.61 -12.2 0.17 352
  360 +354 4 31.38 -38.78 -11.23 0.17 353
  361 +355 4 33.22 -37.03 -9.26 0.17 354
  362 +356 4 33.48 -36.81 -9.22 0.17 355
  363 +357 4 34.84 -28.82 -32.16 0.085 324
  364 +358 4 34.9 -28.82 -32.29 0.085 357
  365 +359 4 37.03 -26.48 -32.52 0.085 358
  366 +360 4 37.73 -26.42 -33.96 0.085 359
  367 +361 4 43.35 -21.89 -34.78 0.085 360
  368 +362 4 43.52 -21.88 -35.12 0.085 361
  369 +363 4 46.08 -20.22 -36.35 0.085 362
  370 +364 4 46.48 -20.19 -37.17 0.085 363
  371 +365 4 48.16 -15.95 -38.72 0.085 364
  372 +366 4 48.27 -15.84 -38.66 0.085 365
  373 +367 4 50.92 -14.57 -37.33 0.085 366
  374 +368 4 51.0 -14.7 -37.22 0.085 367
@@ -51,6 +51,7 @@ std::vector<unsigned> _t_gt; // store indices of nearest edge points in _ @@ -51,6 +51,7 @@ std::vector<unsigned> _t_gt; // store indices of nearest edge points in _
51 float resample_rate = 0.5f; //sample rate for the network (fraction of sigma used as the maximum sample rate) 51 float resample_rate = 0.5f; //sample rate for the network (fraction of sigma used as the maximum sample rate)
52 float camera_factor = 1.2f; //start point of the camera as a function of X and Y size 52 float camera_factor = 1.2f; //start point of the camera as a function of X and Y size
53 float orbit_factor = 0.01f; //degrees per pixel used to orbit the camera 53 float orbit_factor = 0.01f; //degrees per pixel used to orbit the camera
  54 +float zoom_factor = 5.0;
54 55
55 //mouse click 56 //mouse click
56 bool LButtonDown = false; // true when left button down 57 bool LButtonDown = false; // true when left button down
@@ -60,9 +61,6 @@ bool RButtonDown = false; @@ -60,9 +61,6 @@ bool RButtonDown = false;
60 int mouse_x; 61 int mouse_x;
61 int mouse_y; 62 int mouse_y;
62 63
63 -// mouse wheel move  
64 -float des = 0.0f;  
65 -  
66 // render modes 64 // render modes
67 bool compareMode = true; // default mode is compare mode 65 bool compareMode = true; // default mode is compare mode
68 bool mappingMode = false; 66 bool mappingMode = false;
@@ -124,7 +122,6 @@ void glut_render_modelview(){ @@ -124,7 +122,6 @@ void glut_render_modelview(){
124 stim::vec3<float> focus = cam.getLookAt(); //get the camera focal point 122 stim::vec3<float> focus = cam.getLookAt(); //get the camera focal point
125 stim::vec3<float> up = cam.getUp(); //get the camera "up" orientation 123 stim::vec3<float> up = cam.getUp(); //get the camera "up" orientation
126 124
127 - eye[2] += des; //get camera closer to target by factor des  
128 gluLookAt(eye[0], eye[1], eye[2], focus[0], focus[1], focus[2], up[0], up[1], up[2]); //set up the OpenGL camera 125 gluLookAt(eye[0], eye[1], eye[2], focus[0], focus[1], focus[2], up[0], up[1], up[2]); //set up the OpenGL camera
129 } 126 }
130 127
@@ -390,7 +387,7 @@ void glut_mouse(int button, int state, int x, int y){ @@ -390,7 +387,7 @@ void glut_mouse(int button, int state, int x, int y){
390 387
391 // define camera move based on mouse wheel move(actually we can combine this with glut_mouse) 388 // define camera move based on mouse wheel move(actually we can combine this with glut_mouse)
392 void glut_wheel(int wheel, int direction, int x, int y) { 389 void glut_wheel(int wheel, int direction, int x, int y) {
393 - float cam_move_fac; // camera move unit length 390 + /*float cam_move_fac; // camera move unit length
394 stim::vec3<float> eye = cam.getPosition(); // get the camera position (eye point) 391 stim::vec3<float> eye = cam.getPosition(); // get the camera position (eye point)
395 stim::vec3<float> focus = cam.getLookAt(); // get the camera focal point 392 stim::vec3<float> focus = cam.getLookAt(); // get the camera focal point
396 cam_move_fac = fabs(focus[2] - eye[2]) / 50; // divided by 50 393 cam_move_fac = fabs(focus[2] - eye[2]) / 50; // divided by 50
@@ -398,7 +395,15 @@ void glut_wheel(int wheel, int direction, int x, int y) { @@ -398,7 +395,15 @@ void glut_wheel(int wheel, int direction, int x, int y) {
398 if (direction > 0) // if it is button 3(up) 395 if (direction > 0) // if it is button 3(up)
399 des -= cam_move_fac; 396 des -= cam_move_fac;
400 else // if it is button 4(down) 397 else // if it is button 4(down)
401 - des += cam_move_fac; 398 + des += cam_move_fac;*/
  399 + float delta;
  400 +
  401 + if (direction > 0) // if it is button 3(up)
  402 + delta = -zoom_factor;
  403 + else // if it is button 4(down)
  404 + delta = zoom_factor;
  405 +
  406 + cam.Push(delta);
402 glutPostRedisplay(); 407 glutPostRedisplay();
403 } 408 }
404 409
@@ -476,8 +481,7 @@ void glut_initialize(){ @@ -476,8 +481,7 @@ void glut_initialize(){
476 glutAddMenuEntry("Exit", 3); //register menu 3 as exiting 481 glutAddMenuEntry("Exit", 3); //register menu 3 as exiting
477 glutAttachMenu(GLUT_RIGHT_BUTTON); //register right mouse to open menu option 482 glutAttachMenu(GLUT_RIGHT_BUTTON); //register right mouse to open menu option
478 } 483 }
479 - if (swc_ind == 1) //only in rendering swc files, mouse wheel will be used  
480 - glutMouseWheelFunc(glut_wheel); 484 + glutMouseWheelFunc(glut_wheel);
481 485
482 texture_initialize(); //set up texture mapping (create texture maps, enable features) 486 texture_initialize(); //set up texture mapping (create texture maps, enable features)
483 487