Commit 4198e3befbfe3d734b92e0ba688ddac5c8d6a502
1 parent
29e744fa
Added polystyrene.
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10 changed files
with
2596 additions
and
115 deletions
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CMakeLists.txt
| ... | ... | @@ -52,8 +52,10 @@ file(GLOB SRC_CU "*.cu") |
| 52 | 52 | |
| 53 | 53 | #set up copying data files |
| 54 | 54 | configure_file(kPMMA.txt ${CMAKE_CURRENT_BINARY_DIR}/kPMMA.txt @ONLY) |
| 55 | +configure_file(eta_polystyreneK.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_polystyreneK.txt @ONLY) | |
| 55 | 56 | configure_file(eta_TolueneK.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_TolueneK.txt @ONLY) |
| 56 | 57 | configure_file(eta_TolueneN.txt ${CMAKE_CURRENT_BINARY_DIR}/eta_TolueneN.txt @ONLY) |
| 58 | +configure_file(source_midIR.txt ${CMAKE_CURRENT_BINARY_DIR}/source_midIR.txt @ONLY) | |
| 57 | 59 | |
| 58 | 60 | #determine which source files have to be moc'd |
| 59 | 61 | Qt4_wrap_cpp(UI_MOC ${SRC_H}) | ... | ... |
FileIO.cpp
| ... | ... | @@ -14,7 +14,7 @@ vector<SpecPair> LoadSpectrum(string filename) |
| 14 | 14 | //open the file |
| 15 | 15 | ifstream inFile(filename.c_str()); |
| 16 | 16 | |
| 17 | - | |
| 17 | + //read all elements of the file | |
| 18 | 18 | SpecPair temp; |
| 19 | 19 | while(!inFile.eof()){ |
| 20 | 20 | inFile>>temp.nu; |
| ... | ... | @@ -55,6 +55,7 @@ vector<SpecPair> LoadSpectrum(string filename) |
| 55 | 55 | while(j < (int)S.size()-1 && S[j].nu <= nu) |
| 56 | 56 | j++; |
| 57 | 57 | |
| 58 | + | |
| 58 | 59 | lowVal = S[j-1].nu; |
| 59 | 60 | highVal = S[j].nu; |
| 60 | 61 | a = (nu - lowVal)/(highVal - lowVal); | ... | ... |
SimulateSpectrum.cpp
| ... | ... | @@ -2,7 +2,7 @@ |
| 2 | 2 | #include <complex> |
| 3 | 3 | #include <iostream> |
| 4 | 4 | #include <fstream> |
| 5 | -#include "globals.h" | |
| 5 | +#include "globals.h" | |
| 6 | 6 | #include <QProgressDialog> |
| 7 | 7 | #include <stdlib.h> |
| 8 | 8 | //#include "cufft.h" |
| ... | ... | @@ -352,11 +352,16 @@ void updateSpectrum(double* I, double I0, int n) |
| 352 | 352 | |
| 353 | 353 | //set the spectrum value based on the current display type |
| 354 | 354 | if(dispSimType == AbsorbanceSpecType) |
| 355 | + { | |
| 355 | 356 | temp.A = -log10(I[i]/I0); |
| 356 | - else | |
| 357 | + //cout<<temp.nu<<" "<<I[i]<<endl; | |
| 358 | + } | |
| 359 | + else | |
| 357 | 360 | { |
| 358 | - temp.A = I[i]; | |
| 359 | - } | |
| 361 | + temp.A = I[i]; | |
| 362 | + if(useSourceSpectrum) | |
| 363 | + temp.A *= SourceResampled[i].A; | |
| 364 | + } | |
| 360 | 365 | |
| 361 | 366 | SimSpectrum.push_back(temp); |
| 362 | 367 | } |
| ... | ... | @@ -457,6 +462,7 @@ void gpuDetectorSpectrum(int numSamples) |
| 457 | 462 | computeBArray(B, Nl, nLambda); |
| 458 | 463 | |
| 459 | 464 | |
| 465 | + | |
| 460 | 466 | //allocate temporary space for the spectrum |
| 461 | 467 | double* I = (double*)malloc(sizeof(double) * EtaK.size()); |
| 462 | 468 | |
| ... | ... | @@ -525,14 +531,14 @@ double intensityDistortion(){ |
| 525 | 531 | void DistortionMap(float* distortionMap, int nSteps){ |
| 526 | 532 | ofstream outFile("distortion.txt"); |
| 527 | 533 | |
| 528 | - //set the parameters for the distortion simulation | |
| 534 | + //set the parameters for the distortion simulation | |
| 529 | 535 | double range = 0.4; |
| 530 | 536 | double step = (range)/(nSteps-1); |
| 531 | 537 | |
| 532 | 538 | oNAi = 0.2; |
| 533 | - oNAo = 0.5; | |
| 534 | - | |
| 535 | - double startNAi = 0.0; | |
| 539 | + oNAo = 0.5; | |
| 540 | + | |
| 541 | + double startNAi = 0.0; | |
| 536 | 542 | double startNAo = 0.3; |
| 537 | 543 | |
| 538 | 544 | //compute the optical parameters |
| ... | ... | @@ -553,24 +559,24 @@ void DistortionMap(float* distortionMap, int nSteps){ |
| 553 | 559 | complex<double>* B = (complex<double>*)malloc(sizeof(complex<double>) * Nl * nLambda); |
| 554 | 560 | computeBArray(B, Nl, nLambda); |
| 555 | 561 | |
| 556 | - QProgressDialog progress("Computing distortion map...", "Stop", 0, nSteps * nSteps); | |
| 562 | + QProgressDialog progress("Computing distortion map...", "Stop", 0, nSteps * nSteps); | |
| 557 | 563 | progress.setWindowModality(Qt::WindowModal); |
| 558 | 564 | |
| 559 | 565 | double D; |
| 560 | - double e = 0.001; | |
| 561 | - int i, o; | |
| 562 | - for(i=0; i<nSteps; i++) | |
| 563 | - { | |
| 566 | + double e = 0.001; | |
| 567 | + int i, o; | |
| 568 | + for(i=0; i<nSteps; i++) | |
| 569 | + { | |
| 564 | 570 | for(o=0; o<nSteps; o++) |
| 565 | - { | |
| 566 | - //update the progress bar and check for an exit | |
| 567 | - progress.setValue(i * nSteps + o); | |
| 568 | - if (progress.wasCanceled()) | |
| 569 | - break; | |
| 571 | + { | |
| 572 | + //update the progress bar and check for an exit | |
| 573 | + progress.setValue(i * nSteps + o); | |
| 574 | + if (progress.wasCanceled()) | |
| 575 | + break; | |
| 570 | 576 | |
| 571 | 577 | //set the current optical parameters |
| 572 | 578 | cNAi = startNAi + i * step; |
| 573 | - cNAo = startNAo + o * step; | |
| 579 | + cNAo = startNAo + o * step; | |
| 574 | 580 | //cout<<cNAi<<" "<<cNAo<<endl; |
| 575 | 581 | |
| 576 | 582 | //set the current optical parameters |
| ... | ... | @@ -597,15 +603,15 @@ void DistortionMap(float* distortionMap, int nSteps){ |
| 597 | 603 | D = -1.0; |
| 598 | 604 | else |
| 599 | 605 | D = intensityDistortion(); |
| 600 | - } | |
| 606 | + } | |
| 601 | 607 | distortionMap[o * nSteps + i] = D; |
| 602 | 608 | outFile<<D<<" "; |
| 603 | 609 | } |
| 604 | 610 | outFile<<endl; |
| 605 | - //cout<<i<<endl; | |
| 611 | + //cout<<i<<endl; | |
| 606 | 612 | } |
| 607 | - | |
| 608 | - progress.setValue(nSteps * nSteps); | |
| 613 | + | |
| 614 | + progress.setValue(nSteps * nSteps); | |
| 609 | 615 | |
| 610 | 616 | outFile.close(); |
| 611 | -} | |
| 617 | +} | ... | ... |
cudaKK.h
| ... | ... | @@ -58,7 +58,7 @@ __global__ void devComputeSpectrum(double* I, double2* B, double* alpha, int Nl, |
| 58 | 58 | int nSamples, int nLambda, double oThetaI, double oThetaO, double cThetaI, double cThetaO) |
| 59 | 59 | { |
| 60 | 60 | int i = blockIdx.x * blockDim.x + threadIdx.x; |
| 61 | - if(i >= nLambda-1) | |
| 61 | + if(i >= nLambda) | |
| 62 | 62 | return; |
| 63 | 63 | |
| 64 | 64 | //compute the delta-theta value |
| ... | ... | @@ -155,6 +155,7 @@ void cudaComputeSpectrum(double* cpuI, double* cpuB, double* cpuAlpha, |
| 155 | 155 | HANDLE_ERROR(cudaMalloc(&gpuB, sizeof(double2) * nLambda * Nl)); |
| 156 | 156 | HANDLE_ERROR(cudaMemcpy(gpuB, cpuB, sizeof(double2) * nLambda * Nl, cudaMemcpyHostToDevice)); |
| 157 | 157 | |
| 158 | + | |
| 158 | 159 | double* gpuAlpha; |
| 159 | 160 | HANDLE_ERROR(cudaMalloc(&gpuAlpha, sizeof(double) * Nl)); |
| 160 | 161 | HANDLE_ERROR(cudaMemcpy(gpuAlpha, cpuAlpha, sizeof(double) * Nl, cudaMemcpyHostToDevice)); | ... | ... |
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| 1597 | +3977.209235 0.247439 | |
| 1598 | +3979.138047 0.247471 | |
| 1599 | +3981.066858 0.247241 | |
| 1600 | +3982.99567 0.246602 | |
| 1601 | +3984.924481 0.24633 | |
| 1602 | +3986.853293 0.246618 | |
| 1603 | +3988.782104 0.247495 | |
| 1604 | +3990.710916 0.248448 | |
| 1605 | +3992.639727 0.249797 | |
| 1606 | +3994.568539 0.251938 | |
| 1607 | +3996.49735 0.253329 | |
| 1608 | +3998.426162 0.25474 | |
| 1609 | +4000.354973 0.256031 | ... | ... |